README.md

RNAtargeting_web_custom

Source code for the "custom" feature of the cas13d RNA-targeting web app.

WARNING: this is a work in progress; the API could change at any time

Usage

Install

pip install -r requirements.txt

[optional] Run tests

pytest -s tests

Run the app

streamlit run app.py

Citation

Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting. Jingyi Wei, Peter Lotfy, Kian Faizi, Sara Baungaard, Emily Gibson, Eleanor Wang, Hannah Slabodkin, Emily Kinnaman, Sita Chandrasekaran, Hugo Kitano, Matthew G. Durrant, Connor V. Duffy, Patrick D. Hsu, Silvana Konermann bioRxiv 2021.09.14.460134; doi: https://doi.org/10.1101/2021.09.14.460134