core-test.yml

name: Core tests
on: [push, pull_request]
jobs:
  build:
    name: Setup and Test
    runs-on: ubuntu-latest
    services:
      mysql:
        image: mysql:5.7
        env:
          MYSQL_ROOT_PASSWORD: root
        ports:
          - 3306
        options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=10
    steps:
      - name: 'Checkout cbioportal repo'
        uses: actions/checkout@v2
        with:
          path: ./cbioportal
      - name: 'Set up JDK 21'
        uses: oracle-actions/setup-java@v1
        with:
          website: oracle.com
          release: 21
      - name: 'Cache Maven packages'
        uses: actions/cache@v1
        with:
          path: ~/.m2
          key: ${{ runner.os }}-m2-${{ hashFiles('**/pom.xml') }}
          restore-keys: ${{ runner.os }}-m2
      - name: 'Setup mysql'
        run: |
          sudo systemctl start mysql && \
          mysql --host=127.0.0.1 --port=3306 --user=root --password=root <<< 'SET GLOBAL local_infile=1' && \
          mysql --host=127.0.0.1 --port=3306 --user=root --password=root <<< 'CREATE DATABASE cgds_test' && \
          mysql --host=127.0.0.1 --port=3306 --user=root --password=root <<< "CREATE USER 'cbio_user'@'localhost' IDENTIFIED BY 'somepassword'" && \
          mysql --host=127.0.0.1 --port=3306 --user=root --password=root <<< "GRANT ALL ON cgds_test.* TO 'cbio_user'@'localhost'" && \
          mysql --host=127.0.0.1 --port=3306 --user=root --password=root <<< "flush privileges"
      - name: 'Copy maven settings'
        working-directory: ./cbioportal
        run: |
          mkdir -p ~/.m2 && \
          cp .github/settings.xml ~/.m2
      - name: 'Create application.properties'
        working-directory: ./cbioportal
        run: |
          cp src/main/resources/application.properties.EXAMPLE src/main/resources/application.properties
      - name: 'Build cBioPortal once without tests'
        working-directory: ./cbioportal
        run: |
          mvn -q -U -Ppublic -DskipTests clean install
      - name: 'Build cbioportal with tests'
        working-directory: ./cbioportal
        run: |
          mvn -q -U -Ppublic clean install
      - name: 'Run tests separately'
        working-directory: ./cbioportal
        run: |
          mvn -U -Ppublic test -Ddb.test.username=cbio_user -Ddb.test.password=somepassword
      - name: 'Run integration tests separately'
        working-directory: ./cbioportal
        run: |
          mvn -U -Ppublic integration-test -Ddb.test.username=cbio_user -Ddb.test.password=somepassword