From 12312392cbd09906971cb52250d02b3c45d512fc Mon Sep 17 00:00:00 2001 From: cfrioux Date: Fri, 5 Jan 2024 17:13:24 +0100 Subject: [PATCH] address #53, update dependencies of miscoto and menetools in README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 83d8d22..228021a 100644 --- a/README.md +++ b/README.md @@ -69,8 +69,8 @@ pip install -r requirements.txt --no-cache-dir In particular, m2m relies on: * [mpwt](https://github.com/AuReMe/mpwt) to automatize metabolic network reconstruction with Pathway Tools * [padmet](https://github.com/AuReMe/padmet) to manage metabolic networks -* [menetools](https://github.com/cfrioux/MeneTools) to analyze individual metabolic capabilities using logic programming -* [miscoto](https://github.com/cfrioux/miscoto) to analyze collective metabolic capabilities and select communities within microbiota using logic programming +* [menetools](https://github.com/cfrioux/MeneTools) to analyze individual metabolic capabilities using logic programming. **Requires MeneTools > 3.4** +* [miscoto](https://github.com/cfrioux/miscoto) to analyze collective metabolic capabilities and select communities within microbiota using logic programming. **Requires MiSCoTo > 3.2** Also, m2m_analysis relies on other packages: * [networkx](https://github.com/networkx/networkx) to create graph from miscoto results