From 43155df5743f7a525f0431ee692a7cdb9e641c16 Mon Sep 17 00:00:00 2001 From: Michael Uhl Date: Wed, 20 Mar 2024 14:44:12 +0100 Subject: [PATCH] mo --- src/docs/faq.md | 7 ++++++- src/index.md | 6 ++---- 2 files changed, 8 insertions(+), 5 deletions(-) diff --git a/src/docs/faq.md b/src/docs/faq.md index 5b0948c..4933fd2 100644 --- a/src/docs/faq.md +++ b/src/docs/faq.md @@ -9,6 +9,11 @@ There you can also detailed installation instructions, as well as usage examples a comprehensive documentation. +**What organisms are supported?** + +Currently the database contains exclusively human RBP binding motifs. However, RBPBench is not restricted to human datasets, as the user can supply any genome file and define a custom motif database, or add additional motifs to search with the present database motifs. + + **Where to send bug reports and feature requests?** You can either open up a new issue in the RBPBench [GitHub repository](https://github.com/michauhl/RBPBench/issues) @@ -18,4 +23,4 @@ You can either open up a new issue in the RBPBench [GitHub repository](https://g **Figure**: History output files in red signal jobs with errors. Click the bug icon (marked by violet circle) to generate a bug report. - \ No newline at end of file + diff --git a/src/index.md b/src/index.md index 47b2604..5882497 100644 --- a/src/index.md +++ b/src/index.md @@ -5,9 +5,7 @@ using a comprehensive collection of known RNA-binding protein (RBP) binding moti RBPBench can be used for a variety of purposes, from RBP motif search (database or user-supplied RBPs) in genomic regions, over motif co-occurrence analysis, to benchmarking CLIP-seq peak caller methods as well as comparisons across -cell types and CLIP-seq protocols. **Access to the RBPBench webserver is free -to every users, including commercial users. The webserver uses a session cookie -to refer to the user data.** +cell types and CLIP-seq protocols. ```{toctree} :hidden: @@ -23,7 +21,7 @@ docs/faq.md [Webserver Tutorial](docs/webserver_tutorial.md) -[GitHub repository](https://github.com/michauhl/RBPBench) +[Command line version](https://github.com/michauhl/RBPBench) ![RBPBench example visualizations](assets/images/rbpbench_visualization_examples.png)