python-app.yml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: CI tests

on:
  pull_request:
  workflow_call:

permissions:
  contents: read

jobs:
  feature-extraction:

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python 3.9
      uses: actions/setup-python@v3
      with:
        python-version: "3.9"
    - name: Test feature extraction
      run: |
        make test-feature-extraction

  optimization:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python 3.9
      uses: actions/setup-python@v3
      with:
        python-version: "3.9"
    - name: Test optimization
      run: |
        make test-optimization

  model-management:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python 3.9
      uses: actions/setup-python@v3
      with:
        python-version: "3.9"
    - name: Test model management
      run: |
        make test-model-management

  validation:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python 3.9
      uses: actions/setup-python@v3
      with:
        python-version: "3.9"

    - name: Test validation
      run: |
        make test-validation

  somatic-validation:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python 3.9
      uses: actions/setup-python@v3
      with:
        python-version: "3.9"

    - name: Test somatic validation
      run: |
        make test-somatic-validation

  code-style:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python 3.9
      uses: actions/setup-python@v3
      with:
        python-version: "3.9"
    - name: Check code style
      run: |
        make check-code-style