diff --git a/.doctrees/01_Sample_preparation/Considerations.doctree b/.doctrees/01_Sample_preparation/Considerations.doctree
index fdbc4797..dfca0235 100644
Binary files a/.doctrees/01_Sample_preparation/Considerations.doctree and b/.doctrees/01_Sample_preparation/Considerations.doctree differ
diff --git a/.doctrees/01_Sample_preparation/Experimental_design.doctree b/.doctrees/01_Sample_preparation/Experimental_design.doctree
index fc07d3f0..028482f3 100644
Binary files a/.doctrees/01_Sample_preparation/Experimental_design.doctree and b/.doctrees/01_Sample_preparation/Experimental_design.doctree differ
diff --git a/.doctrees/01_Sample_preparation/Reproducibility.doctree b/.doctrees/01_Sample_preparation/Reproducibility.doctree
index f22c1597..2c3d9a8b 100644
Binary files a/.doctrees/01_Sample_preparation/Reproducibility.doctree and b/.doctrees/01_Sample_preparation/Reproducibility.doctree differ
diff --git a/.doctrees/01_Sample_preparation/Resources.doctree b/.doctrees/01_Sample_preparation/Resources.doctree
index 2b1a72a8..ec188f0e 100644
Binary files a/.doctrees/01_Sample_preparation/Resources.doctree and b/.doctrees/01_Sample_preparation/Resources.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Introduction.doctree b/.doctrees/02_Sample_acquisition/Introduction.doctree
index bd446b2d..28d4a0f1 100644
Binary files a/.doctrees/02_Sample_acquisition/Introduction.doctree and b/.doctrees/02_Sample_acquisition/Introduction.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Picking.doctree b/.doctrees/02_Sample_acquisition/Picking.doctree
index 99cb876c..852bf320 100644
Binary files a/.doctrees/02_Sample_acquisition/Picking.doctree and b/.doctrees/02_Sample_acquisition/Picking.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Practical_considerations.doctree b/.doctrees/02_Sample_acquisition/Practical_considerations.doctree
index 055fca64..a10fd2b2 100644
Binary files a/.doctrees/02_Sample_acquisition/Practical_considerations.doctree and b/.doctrees/02_Sample_acquisition/Practical_considerations.doctree differ
diff --git a/.doctrees/02_Sample_acquisition/Resources.doctree b/.doctrees/02_Sample_acquisition/Resources.doctree
index 5960495e..7c858d5e 100644
Binary files a/.doctrees/02_Sample_acquisition/Resources.doctree and b/.doctrees/02_Sample_acquisition/Resources.doctree differ
diff --git a/.doctrees/03_Image_analysis/Classification.doctree b/.doctrees/03_Image_analysis/Classification.doctree
index 5e9c5832..114de164 100644
Binary files a/.doctrees/03_Image_analysis/Classification.doctree and b/.doctrees/03_Image_analysis/Classification.doctree differ
diff --git a/.doctrees/03_Image_analysis/Colocalization.doctree b/.doctrees/03_Image_analysis/Colocalization.doctree
index b037f962..795379f6 100644
Binary files a/.doctrees/03_Image_analysis/Colocalization.doctree and b/.doctrees/03_Image_analysis/Colocalization.doctree differ
diff --git a/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree b/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree
index 95a33bdc..4d86e7fc 100644
Binary files a/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree and b/.doctrees/03_Image_analysis/Common_types_of_analysis.doctree differ
diff --git a/.doctrees/03_Image_analysis/Data_management.doctree b/.doctrees/03_Image_analysis/Data_management.doctree
index bbe47012..68db920c 100644
Binary files a/.doctrees/03_Image_analysis/Data_management.doctree and b/.doctrees/03_Image_analysis/Data_management.doctree differ
diff --git a/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree b/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree
index 573410ff..6e53a267 100644
Binary files a/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree and b/.doctrees/03_Image_analysis/GeneralUseSoftware.doctree differ
diff --git a/.doctrees/03_Image_analysis/Intensity.doctree b/.doctrees/03_Image_analysis/Intensity.doctree
index 73c0ca20..09f91b4d 100644
Binary files a/.doctrees/03_Image_analysis/Intensity.doctree and b/.doctrees/03_Image_analysis/Intensity.doctree differ
diff --git a/.doctrees/03_Image_analysis/Introduction.doctree b/.doctrees/03_Image_analysis/Introduction.doctree
index ff7efe12..a21c3edf 100644
Binary files a/.doctrees/03_Image_analysis/Introduction.doctree and b/.doctrees/03_Image_analysis/Introduction.doctree differ
diff --git a/.doctrees/03_Image_analysis/Resources.doctree b/.doctrees/03_Image_analysis/Resources.doctree
index 342dcd58..3047ea4e 100644
Binary files a/.doctrees/03_Image_analysis/Resources.doctree and b/.doctrees/03_Image_analysis/Resources.doctree differ
diff --git a/.doctrees/03_Image_analysis/Shape.doctree b/.doctrees/03_Image_analysis/Shape.doctree
index d2032731..35e8b81a 100644
Binary files a/.doctrees/03_Image_analysis/Shape.doctree and b/.doctrees/03_Image_analysis/Shape.doctree differ
diff --git a/.doctrees/03_Image_analysis/Software.doctree b/.doctrees/03_Image_analysis/Software.doctree
index 9e466a96..8420bf25 100644
Binary files a/.doctrees/03_Image_analysis/Software.doctree and b/.doctrees/03_Image_analysis/Software.doctree differ
diff --git a/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree b/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree
index 171916a2..5e5bb294 100644
Binary files a/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree and b/.doctrees/03_Image_analysis/SpecificUseSoftware.doctree differ
diff --git a/.doctrees/03_Image_analysis/Tracking.doctree b/.doctrees/03_Image_analysis/Tracking.doctree
index f7200754..3db73c94 100644
Binary files a/.doctrees/03_Image_analysis/Tracking.doctree and b/.doctrees/03_Image_analysis/Tracking.doctree differ
diff --git a/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree b/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree
index 231aed57..4a5105c5 100644
Binary files a/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree and b/.doctrees/03_Image_analysis/_notinyet_Common_pitfalls.doctree differ
diff --git a/.doctrees/04_Data_presentation/Presentation_images.doctree b/.doctrees/04_Data_presentation/Presentation_images.doctree
index 28ce6d41..81779040 100644
Binary files a/.doctrees/04_Data_presentation/Presentation_images.doctree and b/.doctrees/04_Data_presentation/Presentation_images.doctree differ
diff --git a/.doctrees/04_Data_presentation/Resources.doctree b/.doctrees/04_Data_presentation/Resources.doctree
index 20496bb4..9feb1374 100644
Binary files a/.doctrees/04_Data_presentation/Resources.doctree and b/.doctrees/04_Data_presentation/Resources.doctree differ
diff --git a/.doctrees/04_Data_presentation/Statistics.doctree b/.doctrees/04_Data_presentation/Statistics.doctree
index 36a7c32f..07372c31 100644
Binary files a/.doctrees/04_Data_presentation/Statistics.doctree and b/.doctrees/04_Data_presentation/Statistics.doctree differ
diff --git a/.doctrees/Glossary.doctree b/.doctrees/Glossary.doctree
index 1b96f244..663c5dd1 100644
Binary files a/.doctrees/Glossary.doctree and b/.doctrees/Glossary.doctree differ
diff --git a/.doctrees/QuantitativeBioimaging.doctree b/.doctrees/QuantitativeBioimaging.doctree
index aaef802f..0d40be30 100644
Binary files a/.doctrees/QuantitativeBioimaging.doctree and b/.doctrees/QuantitativeBioimaging.doctree differ
diff --git a/.doctrees/community_resources.doctree b/.doctrees/community_resources.doctree
index 1f7c7a3c..9f898430 100644
Binary files a/.doctrees/community_resources.doctree and b/.doctrees/community_resources.doctree differ
diff --git a/.doctrees/contributors.doctree b/.doctrees/contributors.doctree
index 626d2272..d30d64ce 100644
Binary files a/.doctrees/contributors.doctree and b/.doctrees/contributors.doctree differ
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
index 16199699..81ed713d 100644
Binary files a/.doctrees/environment.pickle and b/.doctrees/environment.pickle differ
diff --git a/.doctrees/welcome.doctree b/.doctrees/welcome.doctree
index bd972250..175e1dfb 100644
Binary files a/.doctrees/welcome.doctree and b/.doctrees/welcome.doctree differ