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We encountered the following error during the computation using the script. Could you help identify the possible cause?
svs = lapply(list.files('pan_svs/', '.rds'), function(fn){ gr = readRDS(paste0('pan_svs/', fn)) gr$sample = gsub('(.)\.decomposed.svs.rds', '\1', fn) gr })
svs = clusterSVs(svs, range.seq.comp=TRUE, ins.seq.comp=TRUE, nb.cores=16, batch.maxsize=500, simprep=sr, min.rol=.9, max.ins.dist=100)
Error: unable to find an inherited method for function ‘reduce’ for signature ‘x = "list"’
The text was updated successfully, but these errors were encountered:
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We encountered the following error during the computation using the script. Could you help identify the possible cause?
svs = lapply(list.files('pan_svs/', '.rds'), function(fn){
gr = readRDS(paste0('pan_svs/', fn))
gr$sample = gsub('(.)\.decomposed.svs.rds', '\1', fn)
gr
})
svs = clusterSVs(svs, range.seq.comp=TRUE, ins.seq.comp=TRUE, nb.cores=16, batch.maxsize=500, simprep=sr, min.rol=.9, max.ins.dist=100)
Error: unable to find an inherited method for function ‘reduce’ for signature ‘x = "list"’
The text was updated successfully, but these errors were encountered: