DESCRIPTION

Package: linkSet
Title: Base Classes for Storing Genomic Link Data
Version: 0.99.3
Authors@R: 
    person("Gilbert", "Han", , "GilbertHan1011@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0000-0293-2467"))
Description: The goal of linkSet is to provide tools for working with gene-enhancer interactions, which is commonly seen in HiC, PC-HiC, and single-cell ATAC-seq data analysis. 
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: 
    GenomicRanges,
    S4Vectors,
    R (>= 2.10)
Imports: 
    methods,
    Matrix,
    IRanges,
    GenomeInfoDb,
    BiocGenerics,
    Organism.dplyr,
    InteractionSet,
    ggplot2,
    patchwork,
    scales,
    dplyr,
    foreach,
    iterators,
    stats,
    rlang,
    MASS,
    data.table
Suggests: 
    knitr,
    rmarkdown,
    testthat,
    TxDb.Mmusculus.UCSC.mm10.knownGene,
    TxDb.Hsapiens.UCSC.hg38.knownGene,
    org.Mm.eg.db,
    org.Hs.eg.db,
    GenomicFeatures,
    gamlss,
    gamlss.tr
Collate: class.R AllGenerics.R getset.R
        methods.R annotate.R distance.R formatConverter.R 
        linkSet-package.R GRange_method.R test_helper.R
        visualization.R count.R statical.R
biocViews: Software, HiC, DataRepresentation
URL: https://github.com/GilbertHan1011/linkSet, https://gilberthan1011.github.io/linkSet, https://gilberthan1011.github.io/linkSet/
BugReports: https://github.com/GilbertHan1011/linkSet/issues/new
LazyData: true
VignetteBuilder: knitr