From 116708da1b4bf6d052d3c1d93ef4f339abf74fcf Mon Sep 17 00:00:00 2001 From: Lauren Gonsalves Date: Fri, 26 Apr 2024 17:48:48 +0000 Subject: [PATCH 1/2] Updated db main.nf for hyak use --- modules/local/kneaddata/database/main.nf | 2 ++ 1 file changed, 2 insertions(+) diff --git a/modules/local/kneaddata/database/main.nf b/modules/local/kneaddata/database/main.nf index 378051e..84a1dc0 100644 --- a/modules/local/kneaddata/database/main.nf +++ b/modules/local/kneaddata/database/main.nf @@ -20,6 +20,8 @@ process KNEADDATA_DATABASE { script: def args = task.ext.args ?: '' """ + https_proxy=http://klone-dip1-A-ib:3128 + export https_proxy kneaddata_database \\ --download $kneaddata_db_type bowtie2 kneaddata_${kneaddata_db_type} From 61312386af912b58cd43596f362972de362488ff Mon Sep 17 00:00:00 2001 From: Lauren Gonsalves Date: Sat, 27 Apr 2024 00:33:09 +0000 Subject: [PATCH 2/2] Updated metaphlan db for hyak use --- modules/nf-core/metaphlan/makedb/main.nf | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/modules/nf-core/metaphlan/makedb/main.nf b/modules/nf-core/metaphlan/makedb/main.nf index 97b5bf9..d99599c 100644 --- a/modules/nf-core/metaphlan/makedb/main.nf +++ b/modules/nf-core/metaphlan/makedb/main.nf @@ -19,8 +19,9 @@ process METAPHLAN_MAKEDB { script: def args = task.ext.args ?: '' - """ + https_proxy=http://klone-dip1-A-ib:3128 + export https_proxy metaphlan \\ --install \\ --index ${metaphlan_db_version} \\