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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[tool.hatch.build.targets.wheel]
packages = ["src/bioclip"]
[project]
name = "pybioclip"
dynamic = ["version"]
description = 'Python package that simplifies using the BioCLIP foundation model.'
readme = "README.md"
requires-python = ">=3.8"
license = "MIT"
keywords = []
authors = [
{ name = "John Bradley", email = "[email protected]" },
]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Programming Language :: Python",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: Implementation :: CPython",
"Programming Language :: Python :: Implementation :: PyPy"
]
dependencies = [
'open_clip_torch',
'torchvision',
'torch',
'prettytable',
'pandas',
]
[project.optional-dependencies]
docs = [
"mkdocs",
"mkdocs-material",
"mkdocs-material-extensions",
"mkdocstrings-python"
]
[project.urls]
Documentation = "https://imageomics.github.io/pybioclip/"
Issues = "https://github.com/Imageomics/pybioclip/issues"
Source = "https://github.com/Imageomics/pybioclip"
[project.scripts]
bioclip = "bioclip.__main__:main"
[tool.hatch.version]
path = "src/bioclip/__about__.py"
[tool.hatch.envs.default]
dependencies = [
"coverage[toml]>=6.5",
"pytest",
]
[tool.hatch.envs.default.scripts]
test = "pytest {args:tests}"
test-cov = "coverage run -m pytest {args:tests}"
cov-report = [
"- coverage combine",
"coverage report",
]
cov = [
"test-cov",
"cov-report",
]
[[tool.hatch.envs.all.matrix]]
python = ["3.8", "3.9", "3.10", "3.11"]
[tool.hatch.envs.types]
dependencies = [
"mypy>=1.0.0",
]
[tool.hatch.envs.types.scripts]
check = "mypy --install-types --non-interactive {args:src/bioclip tests}"
[tool.coverage.run]
source_pkgs = ["bioclip", "tests"]
branch = true
parallel = true
omit = [
"src/bioclip/__about__.py",
]
[tool.coverage.paths]
bioclip = ["src/bioclip", "*/bioclip/src/bioclip"]
tests = ["tests", "*/bioclip/tests"]
[tool.coverage.report]
exclude_lines = [
"no cov",
"if __name__ == .__main__.:",
"if TYPE_CHECKING:",
]
[tool.pytest.ini_options]
pythonpath = [
"src"
]