From e105652eb7c9dddeefa2e6c7b7700004ffb52087 Mon Sep 17 00:00:00 2001 From: Oliver Beckstein Date: Tue, 22 Oct 2024 15:00:37 -0700 Subject: [PATCH] removed packages that became MDAKits - update MDAkits & packages page - since we started this list, [pytim](https://marcello-sega.github.io/pytim/) and [MAICoS](https://gitlab.com/maicos-devel/maicos) became MDAKits so they were removed from the list of other packages that work with MDA --- pages/mdakits.md | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/pages/mdakits.md b/pages/mdakits.md index e0544bfd..54e76273 100644 --- a/pages/mdakits.md +++ b/pages/mdakits.md @@ -25,8 +25,7 @@ or share it on [{{ site.mailinglists.discussion.name }}]({{ site.mailinglists.di ## Other (non-MDAKit registered) tools using MDAnalysis -Below we list projects that use MDAnalysis and are not registered as MDAKits: - +Below we list projects that use MDAnalysis and are not (yet) registered as MDAKits: ### Visualization tools @@ -44,9 +43,6 @@ Below we list projects that use MDAnalysis and are not registered as MDAKits: - [pydiffusion](https://github.com/bio-phys/pydiffusion): Analyze the rotational diffusion of your molecules. -- [pytim](https://marcello-sega.github.io/pytim/): Pytim is a package based on - MDAnalysis for the identification and analysis of surface molecules in - configuration files or in trajectories from molecular dynamics simulations. - [pycontact](https://github.com/maxscheurer/pycontact): Analysis of non-covalent interactions in MD trajectories. - [RotamerConvolveMD](https://github.com/MDAnalysis/RotamerConvolveMD): @@ -65,8 +61,6 @@ Below we list projects that use MDAnalysis and are not registered as MDAKits: - [PyInteraph](https://github.com/ELELAB/pyinteraph): A software tool for the analysis of structural communication in protein ensembles, including a PyMOL plugin and an InteractionPlotter. -- [MAICoS](https://gitlab.com/maicos-devel/maicos): Analyze molecular dynamics simulations of - interfacial and confined systems. - [taurenmd](https://taurenmd.readthedocs.io/en/latest/): A command-line interface for analysis of Molecular Dynamics simulations. - [PENSA](https://github.com/drorlab/pensa): A toolkit for exploratory analysis and comparison of protein structural ensembles - [LiPyphilic](https://lipyphilic.readthedocs.io/en/latest/): A Python package for the analysis of lipid membrane simulations.