From 6223f181e0d51d2c518585f653aba07a1b29ce82 Mon Sep 17 00:00:00 2001 From: OPTIMADE Bot <101127277+bot-optimade@users.noreply.github.com> Date: Wed, 21 Dec 2022 08:51:25 +0000 Subject: [PATCH] Update dependencies (#1443) * Bump mkdocs-material from 8.5.10 to 8.5.11 (#1413) Bumps [mkdocs-material](https://github.com/squidfunk/mkdocs-material) from 8.5.10 to 8.5.11. - [Release notes](https://github.com/squidfunk/mkdocs-material/releases) - [Changelog](https://github.com/squidfunk/mkdocs-material/blob/master/CHANGELOG) - [Commits](https://github.com/squidfunk/mkdocs-material/compare/8.5.10...8.5.11) --- updated-dependencies: - dependency-name: mkdocs-material dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump black from 22.10.0 to 22.12.0 (#1430) Bumps [black](https://github.com/psf/black) from 22.10.0 to 22.12.0. - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](https://github.com/psf/black/compare/22.10.0...22.12.0) --- updated-dependencies: - dependency-name: black dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump lark from 1.1.4 to 1.1.5 (#1432) Bumps [lark](https://github.com/lark-parser/lark) from 1.1.4 to 1.1.5. - [Release notes](https://github.com/lark-parser/lark/releases) - [Changelog](https://github.com/lark-parser/lark/blob/master/CHANGELOG.md) - [Commits](https://github.com/lark-parser/lark/compare/1.1.4...1.1.5) --- updated-dependencies: - dependency-name: lark dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pylint from 2.15.6 to 2.15.8 (#1431) Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.6 to 2.15.8. - [Release notes](https://github.com/PyCQA/pylint/releases) - [Commits](https://github.com/PyCQA/pylint/compare/v2.15.6...v2.15.8) --- updated-dependencies: - dependency-name: pylint dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pylint from 2.15.8 to 2.15.9 (#1436) Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.8 to 2.15.9. - [Release notes](https://github.com/PyCQA/pylint/releases) - [Commits](https://github.com/PyCQA/pylint/compare/v2.15.8...v2.15.9) --- updated-dependencies: - dependency-name: pylint dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump mkdocstrings[python-legacy] from 0.19.0 to 0.19.1 (#1437) Bumps [mkdocstrings[python-legacy]](https://github.com/mkdocstrings/mkdocstrings) from 0.19.0 to 0.19.1. - [Release notes](https://github.com/mkdocstrings/mkdocstrings/releases) - [Changelog](https://github.com/mkdocstrings/mkdocstrings/blob/master/CHANGELOG.md) - [Commits](https://github.com/mkdocstrings/mkdocstrings/compare/0.19.0...0.19.1) --- updated-dependencies: - dependency-name: mkdocstrings[python-legacy] dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump isort from 5.10.1 to 5.11.3 (#1438) Bumps [isort](https://github.com/pycqa/isort) from 5.10.1 to 5.11.3. - [Release notes](https://github.com/pycqa/isort/releases) - [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md) - [Commits](https://github.com/pycqa/isort/compare/5.10.1...5.11.3) --- updated-dependencies: - dependency-name: isort dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump numpy from 1.23.5 to 1.24.0 (#1439) Bumps [numpy](https://github.com/numpy/numpy) from 1.23.5 to 1.24.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v1.23.5...v1.24.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump jarvis-tools from 2022.9.16 to 2022.12.11 (#1440) * Bump jarvis-tools from 2022.9.16 to 2022.12.11 Bumps [jarvis-tools](https://github.com/usnistgov/jarvis) from 2022.9.16 to 2022.12.11. - [Release notes](https://github.com/usnistgov/jarvis/releases) - [Commits](https://github.com/usnistgov/jarvis/compare/v2022.09.16...v2022.12.11) --- updated-dependencies: - dependency-name: jarvis-tools dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] * Fix typo Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Matthew Evans <7916000+ml-evs@users.noreply.github.com> * Bump aiida-core from 2.1.2 to 2.2.0 Bumps [aiida-core](https://github.com/aiidateam/aiida-core) from 2.1.2 to 2.2.0. - [Release notes](https://github.com/aiidateam/aiida-core/releases) - [Changelog](https://github.com/aiidateam/aiida-core/blob/main/CHANGELOG.md) - [Commits](https://github.com/aiidateam/aiida-core/compare/v2.1.2...v2.2.0) --- updated-dependencies: - dependency-name: aiida-core dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] * Also bump pyyaml * Update `pre-commit` hooks * Update setup.py Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Matthew Evans <7916000+ml-evs@users.noreply.github.com> Co-authored-by: Matthew Evans --- .pre-commit-config.yaml | 4 ++-- requirements-client.txt | 6 +++--- requirements-dev.txt | 6 +++--- requirements-docs.txt | 4 ++-- requirements.txt | 4 ++-- setup.py | 8 ++------ 6 files changed, 14 insertions(+), 18 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 62c1f5826..e2738159d 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -3,7 +3,7 @@ default_language_version: repos: - repo: https://github.com/ambv/black - rev: 22.10.0 + rev: 22.12.0 hooks: - id: black name: Blacken @@ -52,7 +52,7 @@ repos: additional_dependencies: ["types-all", "pydantic~=1.10"] - repo: https://github.com/PyCQA/isort - rev: 5.10.1 + rev: v5.11.3 hooks: - id: isort name: "isort" diff --git a/requirements-client.txt b/requirements-client.txt index f80577f73..855f91489 100644 --- a/requirements-client.txt +++ b/requirements-client.txt @@ -1,5 +1,5 @@ -aiida-core==2.1.2 +aiida-core==2.2.0 ase==3.22.1 -jarvis-tools==2022.9.16 -numpy==1.23.5 +jarvis-tools==2022.12.11 +numpy==1.24.0 pymatgen==2022.7.25 diff --git a/requirements-dev.txt b/requirements-dev.txt index 169b1b3cf..82e552ca9 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -1,13 +1,13 @@ -black==22.10.0 +black==22.12.0 build==0.9.0 codecov==2.1.12 flake8==6.0.0 invoke==1.7.3 -isort==5.10.1 +isort==5.11.3 jsondiff==2.0.0 mypy==0.991 pre-commit==2.20.0 -pylint==2.15.6 +pylint==2.15.9 pytest==7.2.0 pytest-cov==4.0.0 pytest-httpx==0.21.2 diff --git a/requirements-docs.txt b/requirements-docs.txt index 269d98af1..6ca2d82a0 100644 --- a/requirements-docs.txt +++ b/requirements-docs.txt @@ -1,5 +1,5 @@ mike==1.1.2 mkdocs==1.4.2 mkdocs-awesome-pages-plugin==2.8.0 -mkdocs-material==8.5.10 -mkdocstrings[python-legacy]==0.19.0 +mkdocs-material==8.5.11 +mkdocstrings[python-legacy]==0.19.1 diff --git a/requirements.txt b/requirements.txt index d307bb640..29052752c 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,6 +1,6 @@ email_validator==1.3.0 -lark==1.1.4 +lark==1.1.5 pydantic==1.10.2 -pyyaml==5.4 +pyyaml==6.0 requests==2.28.1 uvicorn==0.20.0 diff --git a/setup.py b/setup.py index 95dda5908..ee0dd8494 100644 --- a/setup.py +++ b/setup.py @@ -20,11 +20,7 @@ # Server minded elastic_deps = ["elasticsearch-dsl~=7.4,<8.0", "elasticsearch~=7.17"] mongo_deps = ["pymongo>=3.12.1,<5", "mongomock~=4.1"] -server_deps = [ - "uvicorn~=0.19", - "fastapi~=0.86", - "pyyaml>=5.4,<7", # Keep at pyyaml 5.4 for aiida-core support -] + mongo_deps +server_deps = ["uvicorn~=0.19", "fastapi~=0.86", "pyyaml~=6.0"] + mongo_deps # Client minded @@ -39,7 +35,7 @@ cif_deps = ["numpy~=1.23"] pdb_deps = cif_deps pymatgen_deps = ["pymatgen~=2022.7"] -jarvis_deps = ["jarvis-tools==2022.8.27"] +jarvis_deps = ["jarvis-tools==2022.12.11"] client_deps = cif_deps # General