$ git clone https://github.com/Meltpinkg/Jellycat.git && cd Jellycat/
Jellycat is an ultra-fast and sensitive integration toolset especially for population-based SV calling and large callsets merging.
1. python3
2. pysam
3. numpy
python cuteSV_merge.py <input.txt> <output.vcf> <work_dir>
| Parameter | Description | Default |
|---|---|---|
| --threads | Number of threads to use. | 16 |
| --annotation | Annotation file to add. | NULL |
| --massive | Choice for large sample. | False |
| --support | Minimum support sample number to report. | 1 |
| -max_dist | Maximum distance for merging two SVs. | 1000 |
For advising, bug reporting and requiring help, please post on Github Issue or contact [email protected].