Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Preloading all databases #24

Open
alnf opened this issue Jan 19, 2022 · 0 comments
Open

Preloading all databases #24

alnf opened this issue Jan 19, 2022 · 0 comments

Comments

@alnf
Copy link
Member

alnf commented Jan 19, 2022

When executing cap2 run db -c config.yaml few db files are still omitted and are downloaded on later stages (e..g. during reads). Namely:

  1. minikraken2_v2_8GB_201904.tgz

  2. GCA_000001635.9_GRCm39_genomic.fna.gz (could be related to MouseRemovalDB always redownloads db file #23)

Is there a reason behind not including these files and is it possible to download them all together in one command?
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@alnf