From 00ccdaea239db30adabd7ce73e9bdd7985aa96a8 Mon Sep 17 00:00:00 2001 From: Andrey Fedorov Date: Tue, 14 Jan 2025 10:09:56 -0500 Subject: [PATCH] added related link --- .../README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/PW42_2025_GranCanaria/Projects/EvaluationOfImiBigpictureWsidicomizerAsAToolForConversionIntoDicomWholeSlideImagingFormat/README.md b/PW42_2025_GranCanaria/Projects/EvaluationOfImiBigpictureWsidicomizerAsAToolForConversionIntoDicomWholeSlideImagingFormat/README.md index 0176c390d..a1e2d5fbd 100644 --- a/PW42_2025_GranCanaria/Projects/EvaluationOfImiBigpictureWsidicomizerAsAToolForConversionIntoDicomWholeSlideImagingFormat/README.md +++ b/PW42_2025_GranCanaria/Projects/EvaluationOfImiBigpictureWsidicomizerAsAToolForConversionIntoDicomWholeSlideImagingFormat/README.md @@ -97,6 +97,7 @@ Other related materials: * IDC Portal: [https://portal.imaging.datacommons.cancer.gov/](https://portal.imaging.datacommons.cancer.gov/) * [conversion_mirax_dicom](https://github.com/ImagingDataCommons/conversion_mirax_dicom/blob/main/add_metadata.py) (currently, private repo) * Related earlier project from PW40: [https://projectweek.na-mic.org/PW40_2024_GranCanaria/Projects/WsiDicomImprovementFromViewerToAnalysis/](https://projectweek.na-mic.org/PW40_2024_GranCanaria/Projects/WsiDicomImprovementFromViewerToAnalysis/) +* Code from Fabian Hörst experiments: [https://github.com/TIO-IKIM/PathoPatcher/blob/main/pathopatch/patch_extraction/patch_extraction.py](https://github.com/TIO-IKIM/PathoPatcher/blob/main/pathopatch/patch_extraction/patch_extraction.py) * Test samples used by wsidicomizer: [https://github.com/imi-bigpicture/wsidicomizer/blob/main/tests/download_test_images.py#L23-L60](https://github.com/imi-bigpicture/wsidicomizer/blob/main/tests/download_test_images.py#L23-L60) * [Google WSI transformation pipeline](https://github.com/GoogleCloudPlatform/medical-imaging/blob/main/pathology/transformation_pipeline/docs/digital_pathology_transformation_pipeline_to_dicom_spec.md)