From 3474c0fe851d469c4fc48f75fa0e6f4ce97e3d46 Mon Sep 17 00:00:00 2001 From: Mihajlo Pavlovic Date: Fri, 13 Dec 2024 14:24:15 +0100 Subject: [PATCH 1/5] rewrite insert assertion --- package-lock.json | 774 +++++++++++++++++----------- src/service/data-service.js | 16 + src/service/triple-store-service.js | 101 ++-- 3 files changed, 546 insertions(+), 345 deletions(-) diff --git a/package-lock.json b/package-lock.json index a4ac6eb8f..f218030fe 100644 --- a/package-lock.json +++ b/package-lock.json @@ -4001,9 +4001,9 @@ } }, "node_modules/@jridgewell/gen-mapping": { - "version": "0.3.5", - "resolved": "https://registry.npmjs.org/@jridgewell/gen-mapping/-/gen-mapping-0.3.5.tgz", - "integrity": "sha512-IzL8ZoEDIBRWEzlCcRhOaCupYyN5gdIK+Q6fbFdPDg6HqX6jpkItn7DFIpW9LQzXG6Df9sA7+OKnq0qlz/GaQg==", + "version": "0.3.8", + "resolved": "https://registry.npmjs.org/@jridgewell/gen-mapping/-/gen-mapping-0.3.8.tgz", + "integrity": "sha512-imAbBGkb+ebQyxKgzv5Hu2nmROxoDOXHh80evxdoXNOrvAnVx7zimzc1Oo5h9RlfV4vPXaE2iM5pOFbvOCClWA==", "dev": true, "dependencies": { "@jridgewell/set-array": "^1.2.1", @@ -5873,9 +5873,9 @@ } }, "node_modules/@types/node": { - 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"is-date-object": "^1.0.5", + "is-date-object": "^1.1.0", "is-finalizationregistry": "^1.1.0", "is-generator-function": "^1.0.10", - "is-regex": "^1.1.4", + "is-regex": "^1.2.1", "is-weakref": "^1.0.2", "isarray": "^2.0.5", - "which-boxed-primitive": "^1.0.2", + "which-boxed-primitive": "^1.1.0", "which-collection": "^1.0.2", - "which-typed-array": "^1.1.15" + "which-typed-array": "^1.1.16" } }, "which-collection": { diff --git a/src/service/data-service.js b/src/service/data-service.js index 0e1a8c903..a44c93a10 100644 --- a/src/service/data-service.js +++ b/src/service/data-service.js @@ -129,6 +129,22 @@ class DataService { return groupedPublic; } + + insertStringInSortadArray(array, str) { + // Assuming triplesArray is already sorted + let left = 0; + let right = array.length; + while (left < right) { + const mid = Math.floor((left + right) / 2); + if (array[mid].localeCompare(str) < 0) { + left = mid + 1; + } else { + right = mid; + } + } + array.splice(left, 0, str); + return left; + } } export default DataService; diff --git a/src/service/triple-store-service.js b/src/service/triple-store-service.js index 0cc782a75..384e7eca3 100644 --- a/src/service/triple-store-service.js +++ b/src/service/triple-store-service.js @@ -1,10 +1,12 @@ /* eslint-disable no-await-in-loop */ import { setTimeout } from 'timers/promises'; +import { kcTools } from 'assertion-tools'; import { BASE_NAMED_GRAPHS, TRIPLE_STORE_REPOSITORY, TRIPLES_VISIBILITY, + PRIVATE_RESOURCE_PREDICATE, } from '../constants/constants.js'; class TripleStoreService { @@ -17,6 +19,7 @@ class TripleStoreService { this.ualService = ctx.ualService; this.dataService = ctx.dataService; this.paranetService = ctx.paranetService; + this.cryptoService = ctx.cryptoService; } initializeRepositories() { @@ -34,6 +37,7 @@ class TripleStoreService { repository, knowledgeCollectionUAL, triples, + ual, retries = 1, retryDelay = 0, ) { @@ -56,66 +60,79 @@ class TripleStoreService { // knowledgeAssetsUALs.map((ual) => `<${ual}>`), // ); // const unifiedGraphTriples = [...triples, ...tripleAnnotations]; - const publicKnowledgeAssetsTriples = this.dataService.splitConnectedArrays( - triples.public ?? triples, - ); - - const publicKnowledgeAssetsUALs = []; - - for (let i = 1; i <= publicKnowledgeAssetsTriples.length; i += 1) { - publicKnowledgeAssetsUALs.push(`${knowledgeCollectionUAL}/${i}`); - } const promises = []; + const publicAssertion = triples.public ?? triples; - if (triples.private?.length && !existsInNamedGraphs) { - const privateKnowledgeAssetsTriples = this.dataService.groupTriplesBySubject( - triples.private, - ); - const privateKnowledgeAssetsUALs = []; - let publicIndex = 0; - let privateIndex = 0; - while ( - publicIndex < publicKnowledgeAssetsTriples.length && - privateIndex < privateKnowledgeAssetsTriples.length - ) { - // const [privateSubject] = privateKnowledgeAssetsTriples[privateIndex][0].split(' '); - // Check if first triple is content or private existence identifier - if ( - this.dataService.quadsContainsPrivateRepresentations( - publicKnowledgeAssetsTriples[publicIndex], - ) - ) { - privateKnowledgeAssetsUALs.push(publicKnowledgeAssetsUALs[publicIndex]); - privateIndex += 1; - } - publicIndex += 1; + const filteredPublic = []; + const privateHashTriples = []; + publicAssertion.forEach((triple) => { + if (triple.includes(PRIVATE_RESOURCE_PREDICATE)) { + filteredPublic.push(triple); + } else { + privateHashTriples.push(triple); } + }); - if (privateKnowledgeAssetsUALs.length > 0) { - promises.push( - this.tripleStoreModuleManager.createKnowledgeCollectionNamedGraphs( - this.repositoryImplementations[repository], - repository, - privateKnowledgeAssetsUALs, - privateKnowledgeAssetsTriples, - TRIPLES_VISIBILITY.PRIVATE, - ), + const publicKnowledgeAssetsTriplesGrouped = kcTools.groupNquadsBySubject( + publicAssertion, + true, + ); + const publicKnowledgeAssetsUALs = publicKnowledgeAssetsTriplesGrouped.map( + (_, index) => `${ual}:${index + 1}`, + ); + + const publicSubjectHashMap = publicKnowledgeAssetsTriplesGrouped.reduce( + (map, group, index) => { + const [publicSubject] = group[0].split(' '); + const publicSubjectHash = this.cryptoService(publicSubject.slice(1, -1)); + map.set(publicSubjectHash, index); + return map; + }, + new Map(), + ); + const sortedPrivateRepresentationTriples = []; + for (const privateHashTriple of privateHashTriples) { + const privateHash = privateHashTriple + .split(' ')[0] + .slice(PRIVATE_RESOURCE_PREDICATE.length + 1, -1); + if (publicSubjectHashMap.has(privateHash)) { + const publicIndex = publicSubjectHashMap.get(privateHash); + this.dataService.insertStringInSortadArray( + publicKnowledgeAssetsTriplesGrouped[publicIndex], + privateHashTriple, ); + } else { + sortedPrivateRepresentationTriples.push(privateHashTriple); } } + const startIndexForPrivateKnowledgeAssetsWithoutPublicPair = + publicKnowledgeAssetsUALs.length + 1; + publicKnowledgeAssetsTriplesGrouped.push( + ...sortedPrivateRepresentationTriples.map((triple) => [triple]), + ); + publicKnowledgeAssetsUALs.push( + ...sortedPrivateRepresentationTriples.map( + (_, index) => + `${ual}:${startIndexForPrivateKnowledgeAssetsWithoutPublicPair + index}`, + ), + ); + if (!existsInNamedGraphs) { promises.push( this.tripleStoreModuleManager.createKnowledgeCollectionNamedGraphs( this.repositoryImplementations[repository], repository, publicKnowledgeAssetsUALs, - publicKnowledgeAssetsTriples, TRIPLES_VISIBILITY.PUBLIC, + publicKnowledgeAssetsTriplesGrouped, ), ); } const metadataTriples = publicKnowledgeAssetsUALs - .map((ual) => `<${ual}> "${ual}:0" .`) + .map( + (publicKnowledgeAssetUAL) => + `<${publicKnowledgeAssetUAL}> "${publicKnowledgeAssetUAL}:0" .`, + ) .join('\n'); promises.push( From 75a58e4a4224b2789f90bf22b0161fadecf05906 Mon Sep 17 00:00:00 2001 From: Mihajlo Pavlovic Date: Fri, 13 Dec 2024 16:28:58 +0100 Subject: [PATCH 2/5] public-privat-rework --- src/service/data-service.js | 2 +- src/service/triple-store-service.js | 52 +++++++++++++++++++++++++++++ 2 files changed, 53 insertions(+), 1 deletion(-) diff --git a/src/service/data-service.js b/src/service/data-service.js index a44c93a10..0b7adc6c0 100644 --- a/src/service/data-service.js +++ b/src/service/data-service.js @@ -130,7 +130,7 @@ class DataService { return groupedPublic; } - insertStringInSortadArray(array, str) { + insertStringInSortedArray(array, str) { // Assuming triplesArray is already sorted let left = 0; let right = array.length; diff --git a/src/service/triple-store-service.js b/src/service/triple-store-service.js index 384e7eca3..cfba9b8ac 100644 --- a/src/service/triple-store-service.js +++ b/src/service/triple-store-service.js @@ -127,6 +127,58 @@ class TripleStoreService { publicKnowledgeAssetsTriplesGrouped, ), ); + + if (triples.private?.length) { + const privateKnowledgeAssetsTriplesGrouped = kcTools.groupNquadsBySubject( + publicAssertion, + true, + ); + + const privateKnowledgeAssetsUALs = []; + + // const privateSubjectHashMap = privateKnowledgeAssetsTriplesGrouped.reduce( + // (map, group, index) => { + // const [privateSubject] = group[0].split(' '); + // const privateSubjectHash = privateSubject.slice(1, -1); + // map.set(privateSubjectHash, index); + // return map; + // }, + // new Map(), ); + + const privateRepresentationTriplesSubjectMap = + sortedPrivateRepresentationTriples.reduce((map, triple, index) => { + const privateHashedSubject = triple + .split(' ')[0] + .slice(PRIVATE_RESOURCE_PREDICATE.length + 1, -1); + map.set(privateHashedSubject, index); + return map; + }, new Map()); + + for (const privateTriple of privateKnowledgeAssetsTriplesGrouped) { + const [privateSubject] = privateTriple[0].split(' '); + const privateSubjectHash = this.cryptoService.sha256( + privateSubject.slice(1, -1), + ); + + if (publicSubjectHashMap.has(privateSubjectHash)) { + const publicIndex = publicSubjectHashMap.get(privateSubjectHash); + privateKnowledgeAssetsUALs.push(publicKnowledgeAssetsUALs[publicIndex]); + } else { + const publicIndex = + privateRepresentationTriplesSubjectMap.get(privateSubjectHash); + privateKnowledgeAssetsUALs.push(publicKnowledgeAssetsUALs[publicIndex]); + } + } + promises.push( + this.tripleStoreModuleManager.createKnowledgeCollectionNamedGraphs( + this.repositoryImplementations[repository], + repository, + privateKnowledgeAssetsUALs, + TRIPLES_VISIBILITY.PRIVATE, + privateKnowledgeAssetsTriplesGrouped, + ), + ); + } } const metadataTriples = publicKnowledgeAssetsUALs .map( From 1a1657af36bbdff202b29184edd8983d91aa0ba2 Mon Sep 17 00:00:00 2001 From: Mihajlo Pavlovic Date: Fri, 13 Dec 2024 16:31:39 +0100 Subject: [PATCH 3/5] Correct filtering --- src/service/triple-store-service.js | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/service/triple-store-service.js b/src/service/triple-store-service.js index cfba9b8ac..832d16710 100644 --- a/src/service/triple-store-service.js +++ b/src/service/triple-store-service.js @@ -67,9 +67,9 @@ class TripleStoreService { const privateHashTriples = []; publicAssertion.forEach((triple) => { if (triple.includes(PRIVATE_RESOURCE_PREDICATE)) { - filteredPublic.push(triple); - } else { privateHashTriples.push(triple); + } else { + filteredPublic.push(triple); } }); From c7eba8cd07ba63a990e1d56a22f089600a8e67bc Mon Sep 17 00:00:00 2001 From: Mihajlo Pavlovic Date: Fri, 13 Dec 2024 18:00:55 +0100 Subject: [PATCH 4/5] fixes --- src/service/triple-store-service.js | 32 +++++++++++++++++------------ 1 file changed, 19 insertions(+), 13 deletions(-) diff --git a/src/service/triple-store-service.js b/src/service/triple-store-service.js index 832d16710..160a3f627 100644 --- a/src/service/triple-store-service.js +++ b/src/service/triple-store-service.js @@ -7,6 +7,7 @@ import { TRIPLE_STORE_REPOSITORY, TRIPLES_VISIBILITY, PRIVATE_RESOURCE_PREDICATE, + PRIVATE_HASH_SUBJECT_PREFIX, } from '../constants/constants.js'; class TripleStoreService { @@ -37,7 +38,6 @@ class TripleStoreService { repository, knowledgeCollectionUAL, triples, - ual, retries = 1, retryDelay = 0, ) { @@ -74,17 +74,17 @@ class TripleStoreService { }); const publicKnowledgeAssetsTriplesGrouped = kcTools.groupNquadsBySubject( - publicAssertion, + filteredPublic, true, ); const publicKnowledgeAssetsUALs = publicKnowledgeAssetsTriplesGrouped.map( - (_, index) => `${ual}:${index + 1}`, + (_, index) => `${knowledgeCollectionUAL}/${index + 1}`, ); const publicSubjectHashMap = publicKnowledgeAssetsTriplesGrouped.reduce( (map, group, index) => { const [publicSubject] = group[0].split(' '); - const publicSubjectHash = this.cryptoService(publicSubject.slice(1, -1)); + const publicSubjectHash = this.cryptoService.sha256(publicSubject.slice(1, -1)); map.set(publicSubjectHash, index); return map; }, @@ -94,10 +94,10 @@ class TripleStoreService { for (const privateHashTriple of privateHashTriples) { const privateHash = privateHashTriple .split(' ')[0] - .slice(PRIVATE_RESOURCE_PREDICATE.length + 1, -1); + .slice(PRIVATE_HASH_SUBJECT_PREFIX.length + 1, -1); if (publicSubjectHashMap.has(privateHash)) { const publicIndex = publicSubjectHashMap.get(privateHash); - this.dataService.insertStringInSortadArray( + this.dataService.insertStringInSortedArray( publicKnowledgeAssetsTriplesGrouped[publicIndex], privateHashTriple, ); @@ -106,14 +106,16 @@ class TripleStoreService { } } const startIndexForPrivateKnowledgeAssetsWithoutPublicPair = - publicKnowledgeAssetsUALs.length + 1; + publicKnowledgeAssetsUALs.length; publicKnowledgeAssetsTriplesGrouped.push( ...sortedPrivateRepresentationTriples.map((triple) => [triple]), ); publicKnowledgeAssetsUALs.push( ...sortedPrivateRepresentationTriples.map( (_, index) => - `${ual}:${startIndexForPrivateKnowledgeAssetsWithoutPublicPair + index}`, + `${knowledgeCollectionUAL}/${ + startIndexForPrivateKnowledgeAssetsWithoutPublicPair + index + 1 + }`, ), ); @@ -123,14 +125,14 @@ class TripleStoreService { this.repositoryImplementations[repository], repository, publicKnowledgeAssetsUALs, - TRIPLES_VISIBILITY.PUBLIC, publicKnowledgeAssetsTriplesGrouped, + TRIPLES_VISIBILITY.PUBLIC, ), ); if (triples.private?.length) { const privateKnowledgeAssetsTriplesGrouped = kcTools.groupNquadsBySubject( - publicAssertion, + triples.private, true, ); @@ -149,7 +151,7 @@ class TripleStoreService { sortedPrivateRepresentationTriples.reduce((map, triple, index) => { const privateHashedSubject = triple .split(' ')[0] - .slice(PRIVATE_RESOURCE_PREDICATE.length + 1, -1); + .slice(PRIVATE_HASH_SUBJECT_PREFIX.length + 1, -1); map.set(privateHashedSubject, index); return map; }, new Map()); @@ -166,7 +168,11 @@ class TripleStoreService { } else { const publicIndex = privateRepresentationTriplesSubjectMap.get(privateSubjectHash); - privateKnowledgeAssetsUALs.push(publicKnowledgeAssetsUALs[publicIndex]); + privateKnowledgeAssetsUALs.push( + publicKnowledgeAssetsUALs[ + startIndexForPrivateKnowledgeAssetsWithoutPublicPair + publicIndex + ], + ); } } promises.push( @@ -174,8 +180,8 @@ class TripleStoreService { this.repositoryImplementations[repository], repository, privateKnowledgeAssetsUALs, - TRIPLES_VISIBILITY.PRIVATE, privateKnowledgeAssetsTriplesGrouped, + TRIPLES_VISIBILITY.PRIVATE, ), ); } From 97530e480e447636e266015345c9ed643b859f33 Mon Sep 17 00:00:00 2001 From: Mihajlo Pavlovic Date: Sat, 14 Dec 2024 14:51:36 +0100 Subject: [PATCH 5/5] Add some comments --- src/service/triple-store-service.js | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/service/triple-store-service.js b/src/service/triple-store-service.js index 160a3f627..57fab6bfb 100644 --- a/src/service/triple-store-service.js +++ b/src/service/triple-store-service.js @@ -102,11 +102,13 @@ class TripleStoreService { privateHashTriple, ); } else { + // If there is no public match add it as new KA at the end sortedPrivateRepresentationTriples.push(privateHashTriple); } } const startIndexForPrivateKnowledgeAssetsWithoutPublicPair = publicKnowledgeAssetsUALs.length; + // Add private hashes without public pair to the end publicKnowledgeAssetsTriplesGrouped.push( ...sortedPrivateRepresentationTriples.map((triple) => [triple]), );