diff --git a/tests/test_juno_mapping.py b/tests/test_juno_mapping.py index 041ccbf..b767351 100644 --- a/tests/test_juno_mapping.py +++ b/tests/test_juno_mapping.py @@ -147,7 +147,7 @@ def test_junomapping_dryrun_changed_user_params(self) -> None: "--reference", "reference.fasta", "--disable-mask", - "-maf", + "-smaf", "0.5", "-md", "20", @@ -159,7 +159,7 @@ def test_junomapping_dryrun_changed_user_params(self) -> None: expected_user_param_values = { "species": "mycobacterium_tuberculosis", "reference": "reference.fasta", - "minimum_allele_frequency": 0.5, + "soft_filter_minimum_allele_frequency": 0.5, "minimum_depth": 20, "disable_mask": "True", "mask_bed": "None",