required_packages.txt

## This file is read by install_packages.R to automatically prepare
## the R environment for the course.
## - please add your requirements below (R packages, additional code to run)
## - please don't modify the lines containing START-PACKAGES, END-PACKAGES,
##   START-EXPRESSIONS, END-EXPRESSIONS

## R packages: List here required packages for exercises for R 3.6.1, Bioc 3.9
## (one package per line in format:
##     [github_repo/]pkgname[-min_version]
## where
##      'github_repo' is a github repository (optional)
##      'pkgname' is the name of the package
##      'min_version' is a minimal required version (optional))
## START-PACKAGES:
AUCell
batchelor
BiocNeighbors
BiocSingular
BiocStyle
BUStools/BUSpaRse
CATALYST
cluster
clustree
coop
cowplot
dendextend
DropletUtils
destiny
dynamicTreeCut
dyndimred
e1071
edgeR
flowCore
ggplot2
HDCytoData
htmltools
igraph
iSEE
knitr
limma
MAST
mbkmeans
mclust
pheatmap
RColorBrewer
rmarkdown
rsvd
Rtsne
SC3
scater
scone
scran
Seurat-3.1
satijalab/seurat-wrappers
SingleCellExperiment
slingshot
SummarizedExperiment
sva
TENxPBMCData
dynverse/tradeSeq
tidyverse
umap
uwot
velocyto-team/velocyto.R
zinbwave
## END-PACKAGES

## Additional code: Add here additional expressions to be run, e.g. to download
## data sets from ExperimentHub (or other sources) in advance
## START-EXPRESSIONS:
TENxPBMCData::TENxPBMCData(dataset = "pbmc3k")
## END-EXPRESSIONS