diff --git a/README.rst b/README.rst index 00e48b7..15426df 100644 --- a/README.rst +++ b/README.rst @@ -26,7 +26,7 @@ enhancer-hijacking events from chromatin interaction data in re-arranged genomes Installation ============ -NeoLoopFinder and all the dependencies can be installed using either `conda `_ +NeoLoopFinder and all the dependencies can be installed using either `mamba `_ or `pip `_:: $ conda config --add channels r @@ -34,8 +34,8 @@ or `pip `_:: $ conda config --add channels bioconda $ conda config --add channels conda-forge $ conda config --set channel_priority strict - $ conda create -n neoloop cooler matplotlib pyensembl pybigwig intervaltree scikit-learn=1.1.2 joblib=1.1.0 rpy2 r-mgcv - $ conda activate neoloop + $ mamba create -n neoloop cooler matplotlib pyensembl pybigwig intervaltree scikit-learn=1.1.2 joblib=1.1.0 rpy2 r-mgcv + $ mamba activate neoloop $ pip install -U neoloop TADLib pomegranate Overview