what 's the version of pomegranate?

[HanwenZhu98]

I meet the errror like this:
Traceback (most recent call last):
File "/cluster/home/Kangwen/anaconda3/envs/Hic/bin/segment-cnv", line 111, in run
work.segment(
File "/cluster/home/Kangwen/anaconda3/envs/Hic/lib/python3.10/site-packages/neoloop/cnv/segcnv.py", line 167, in segment
model = HiddenMarkovModel.from_samples(
NameError: name 'HiddenMarkovModel' is not defined

I check it, and find that the error is in the script segcnv at "from pomegranate import NormalDistribution, HiddenMarkovModel"

So,can u tell me how to solve this problem?

[XiaoTaoWang]

It seems that the API has undergone dramatic changes since pomegranate v1.0.0. Can you downgrade your pomegranate to v0.14.8 and try again?

[hmgene]

I have the same issue:
cannot find the version but only v1.00 available in conda

conda search pomegranate
Loading channels: done
# Name                       Version           Build  Channel             
pomegranate                    1.0.0    pyhd8ed1ab_0  conda-forge         
pomegranate                    1.0.0    pyhd8ed1ab_1  conda-forge    

[XiaoTaoWang]

Did you tried using pip to install pomegranate version 0.14.8?

[hmgene]

It is not available on Mac mamba. I have modified your code to adopt the new Pomegranate insteadThank you Sent from my iPhoneOn Dec 10, 2024, at 21:33, Xiaotao Wang ***@***.***> wrote: Did you tried using pip to install pomegranate version 0.14.8? —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you commented.Message ID: ***@***.***>

[mnfrandre]

Hi all,
Please try pomegranate version 0.15.0. Works for me!