Core dump when using HPC-kmer

[palakpsheth]

hey there getting a core dump only when using the -H option. Full cmd:

~/TideHunter-v1.5.4/bin/TideHunter -H --kmer-length 8 --window-size 5 --min-copy 3 --min-period 41 --min-len 41 --out-fmt 2 --thread 19 unmapped.trimmed.fastq.gz > unmapped.trimmed.tidehunter.tsv
double free or corruption (out)
Aborted (core dumped)

Thank you!

[yangao07]

Hi, the HPC-kmer mode does not give us much improvement in our data, so it is not never carefully evaluated.

Can you share the data that lead to the fault?

[palakpsheth]

thank you for your reply @yangao07. I cant upload more than 25mb here but this is an example file of the datatypes
unmapped.trimmed.fastq.gz

finding the tool very useful thank you!

[yangao07]

Hi, sorry for the late reply.
Just fixed a bug that is due to very short input sequence.
It should work now!

[palakpsheth]

@yangao07 thank you for the fix! i can confirm that it no longer core-dumps for my samples