[simd_abpoa_align_sequence_to_graph] Error in cg_backtrack. (4)

[zztin]

Hi,

I received this error code:
[simd_abpoa_align_sequence_to_graph] Error in cg_backtrack. (4)

for a few specific read that fails some runs. I tried on Linux machine

• git clone repo, make
• download TideHunter-v1.4.2 and build from source
• download TideHunter-v1.4.2 and build from source in a singularity image

the failed sequence is provided as a txt file as attachment.

I appreciate your time in looking into this! I am also wondering if it is possible to implement

• excluding the failed reads and keep running
• include the failed read name/ sequence in std-err file or another output file.
  test.txt

Best,
Liting

[zztin]

The three methods all failed with the same error. The singularity recipe I used to build TideHunter is
tidehunter_singularity_recipe.txt

[yangao07]

Hi Liting,

This is a known bug in abPOA (yangao07/abPOA#9).
I have fixed it, but haven't updated it in TideHuner.
Will do that soon, please try it later.

Yan

[yangao07]

This one should be fixed by the latest version (v1.4.3). Please try it out.
The conda may take some time to update.

[zztin]

It worked (also from conda installation).