Issues

• Is it BND only a TRA, or could it be both a TRA and an INV?

  arq5x/lumpy-sv#403 · Filter by author yougulianren opened on Oct 16, 2025

• [BUG] Failed to compile htslib.

  arq5x/lumpy-sv#402 · Filter by author wjunLu opened on Jun 23, 2025

• Does lumpy filter out multiple alleles？

  arq5x/lumpy-sv#401 · Filter by author hhd1008611 opened on Sep 21, 2024

• lumpy fails to call tandem duplications that are shorter than the sequencing read length

  arq5x/lumpy-sv#400 · Filter by author ruomu-helix opened on Sep 19, 2024

• Lumpyexpress memory issue

  arq5x/lumpy-sv#399 · Filter by author jordimaggi opened on Aug 9, 2024

• how are the options '-m', '-mw' and '-msw' defined?

  arq5x/lumpy-sv#398 · Filter by author yqlan opened on Jun 13, 2024

• windows for lumpyexpress

  arq5x/lumpy-sv#397 · Filter by author licongge opened on May 16, 2024

• run lumpy without speedseq

  arq5x/lumpy-sv#396 · Filter by author RafigaM opened on May 7, 2024

• Makefile - update BamTools to compile

  arq5x/lumpy-sv#395 · Filter by author DavidStreid opened on Mar 18, 2024
  2

• Input BAM file not found

  arq5x/lumpy-sv#394 · Filter by author espelpz opened on Feb 21, 2024

• Missing pair end parameters:bamfile, histo_file, mean, stdev, read_length, min_non_overlap, discordant_z

  arq5x/lumpy-sv#393 · Filter by author psardana22 opened on Feb 8, 2024

• Lumpyexpress produces zero INS and CNV

  arq5x/lumpy-sv#392 · Filter by author changhan1110 opened on Jul 4, 2023
  1

• Error reporting about 'make'

  arq5x/lumpy-sv#391 · Filter by author zhaobinkai opened on Feb 21, 2023
  3

• lumpy ::claimsto be version (v 0.2.13)

  arq5x/lumpy-sv#390 · Filter by author EricDeveaud opened on Jan 29, 2023

• Can't find first and/or second of pair in sam block of length 2

  arq5x/lumpy-sv#389 · Filter by author jonahcullen opened on Jan 18, 2023

• ERROR in lumpyexpress -n: command not found; [: ==: unary operator expected

  arq5x/lumpy-sv#388 · Filter by author ClarenceHsiang opened on Jan 7, 2023
  5

• File "/ME/alignment/lumpy-sv//scripts/bamkit/bamlibs.py", line 61 print ','.join(lib_rg[lib]) ^ SyntaxError: invalid syntax

  arq5x/lumpy-sv#387 · Filter by author 1580542426 opened on Nov 10, 2022
  1

• [E::idx_find_and_load] Could not retrieve index file for '-'

  arq5x/lumpy-sv#386 · Filter by author liujiaxin7 opened on Oct 7, 2022
  2

• about out file

  arq5x/lumpy-sv#385 · Filter by author linshengnan09 opened on Sep 15, 2022

• make compile error

  arq5x/lumpy-sv#384 · Filter by author sjads opened on Sep 8, 2022
  5

• parameter required for mean

  arq5x/lumpy-sv#383 · Filter by author J-Bradlee opened on Jul 15, 2022

• lumpy returns more than expected variants

  arq5x/lumpy-sv#382 · Filter by author anoronh4 opened on Jul 1, 2022

• BAM files must be coordinate sorted

  arq5x/lumpy-sv#381 · Filter by author gneedle1 opened on Jun 29, 2022
  1

• Error: -B is required

  arq5x/lumpy-sv#379 · Filter by author khalidanaveed opened on May 24, 2022

• some errors when do "make"

  arq5x/lumpy-sv#378 · Filter by author gaom001 opened on Apr 5, 2022
  1