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Linking QuantMS to ReactomeGSA #83

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jgriss opened this issue Nov 21, 2024 · 0 comments

jgriss commented Nov 21, 2024

As discussed we'd like to support QuantMS as an external data source in ReactomeGSA.

The data we'd need in the end / internally is protein-level quant values per sample, such as:

Sample	Protein 1	Protein 2	...
Sample 1	10	15	...
Sample 2	5	12.5	...

Additionally, we'd need the metadata in some structured format, internally this is then also stored as a simple table:

Sample	Sex	Disease	Tissue
Sample 1	M	Control	Skin
Sample 2	F	Psoriasis	Skin

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