environment.yaml

name: shendurelab-cfDNA-py3.6
channels:
- biocore
- bioconda
- conda-forge
- defaults
- r
dependencies:
- bcftools=1.6=0
- htslib=1.6=0
- joblib=0.9.3=py36_0
- pysam=0.13.0=py36_htslib1.6_0
- samtools=1.6=0
- blas=1.1=openblas
- bzip2=1.0.6=1
- ca-certificates=2017.7.27.1=0
- certifi=2017.7.27.1=py36_0
- curl=7.54.1=0
- krb5=1.14.2=0
- libssh2=1.8.0=1
- ncurses=5.9=10
- numpy=1.13.3=py36_blas_openblas_200
- openblas=0.2.19=2
- openssl=1.0.2l=0
- pip=9.0.1=py36_0
- python=3.6.3=0
- readline=6.2=0
- setuptools=36.6.0=py36_1
- sortedcontainers=1.5.7=py36_0
- sqlite=3.13.0=1
- tk=8.5.19=2
- wheel=0.30.0=py_1
- xz=5.2.3=0
- zlib=1.2.8=3
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=h7cc24e2_2
- libgfortran=3.0.0=1
- libstdcxx-ng=7.2.0=h7a57d05_2
- pip:
  - appdirs==1.4.3
  - bx-python==0.7.3
  - chardet==3.0.4
  - configargparse==0.12.0
  - docopt==0.6.2
  - idna==2.6
  - jedi==0.11.0
  - jsonschema==2.6.0
  - nose==1.3.7
  - parso==0.1.0
  - prompt-toolkit==1.0.15
  - ptpython==0.41
  - pygments==2.2.0
  - pyyaml==3.12
  - ratelimiter==1.2.0
  - requests==2.18.4
  - six==1.11.0
  - snakemake==4.3.0
  - urllib3==1.22
  - wcwidth==0.1.7
  - wrapt==1.10.11