annotate.R fails when plate name has underscores in it

[bethac07]

It seems to ignore everything after the first underscore, so if my backend is in ../../backend/batch/Experiment1_Day1_1/plate, annotate fails because it's looking in ../../backend/batch/Experiment1/plate. It seems to write out to the correct place, and the steps after that seem to work ok IIRC.

[bethac07]

Corrected- It seems to ignore everything after the first underscore, so if my backend is in ../../backend/batch/Experiment1_Day1_1/plate, annotate fails because it's looking in ../../backend/batch/Experiment1/plate. It then also writes out to the wrong place. normalize and preselect then seems to work ok, but select then select wants the shortened versions again.

[shntnu]

@bethac07
Are you on the branch associated with #30 ? If so, I think this is the problem: #30 (comment)

The current master should not have this problem.

[shntnu]

@NasimJ can you confirm that the current master works ok?