diff --git a/src/main/java/org/broadinstitute/hellbender/tools/exome/gcbias/CorrectGCBias.java b/src/main/java/org/broadinstitute/hellbender/tools/exome/gcbias/CorrectGCBias.java index c7997c123..2d59fe1e0 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/exome/gcbias/CorrectGCBias.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/exome/gcbias/CorrectGCBias.java @@ -21,11 +21,14 @@ * read counts must be present in the targets file but the reverse need not be true. * * Output is a read counts file with the same targets (rows) and samples (columns) as the input, corrected for GC bias. + * Coverage is represented by doubles in {@link ReadCountCollection}. + * * @author David Benjamin <davidben@broadinstitute.org> */ @CommandLineProgramProperties( oneLineSummary = "Correct for per-sample GC bias effects.", - summary = "Correct for per-sample GC bias effects.", + summary = "Correct coverage in a read counts files by estimating per-sample bias as a function of target GC" + + " content and dividing input coverage by these derived bias curves.", programGroup = CopyNumberProgramGroup.class ) public class CorrectGCBias extends CommandLineProgram {