cancer type summary shows sample counts in tooltip rather than cases

[inodb]

Query BRAF V600E in Thyroid cases of msk_impact_2017:

It mentions cases in the tooltip, but these are sample counts. In the downloads tab, if you create a virtual study of the altered samples one can see that it's 84 samples and 81 patients/cases:

Sidenote

Stumbled upon this while testing a new CLI tool I've been working on:

> cbiohub variant-frequency V600E --group-by-study-id --count-samples | grep msk_impact_2017
msk_impact_2017                    Thyroid Cancer                                84      231    36.4
> cbiohub variant-frequency BRAF V600E --group-by-study-id | grep msk_impact_2017
msk_impact_2017                    Thyroid Cancer                                81      226    35.8

Please find duckdb_query.txt as well to reproduce the result

[FilledEther20]

Greetings @inodb,
I’d like to work on this issue if it’s available. Could you please assign it to me?
Thanks!

[anshuman-rai-27]

@inodb so here we just need to sync cases in summary and in that table , like example above 84 cases sholud change to 231 cases ? is it what required here ?

[inodb]

@anshuman-rai-27 Thansk for checking! Ideally we can add a UI toggle to indicate whether a user wants sample or patient counts. Then show counts accordingly (81/226 when counting patients, or 84/231 when counting samples)