From be117f6875c46df2cf1c5e7210108d9a0634d7e1 Mon Sep 17 00:00:00 2001
From: Pedro Mendes <mendes@copasi.org>
Date: Thu, 23 May 2024 21:51:39 -0400
Subject: [PATCH] test for error in compartment synapses

---
 tests/0504_CompartmentSynapse/README.md |  7 +++++++
 tests/0504_CompartmentSynapse/run.sh    | 23 +++++++++++++++++++++++
 2 files changed, 30 insertions(+)
 create mode 100644 tests/0504_CompartmentSynapse/README.md
 create mode 100755 tests/0504_CompartmentSynapse/run.sh

diff --git a/tests/0504_CompartmentSynapse/README.md b/tests/0504_CompartmentSynapse/README.md
new file mode 100644
index 0000000..7302bf4
--- /dev/null
+++ b/tests/0504_CompartmentSynapse/README.md
@@ -0,0 +1,7 @@
+# 0504_CompartmentSynapse
+
+attempting to create a set of compartments connected by chemical synapses
+
+## tests
+
+- 1D, 3 units, network, synaptic connection compartment ODE
diff --git a/tests/0504_CompartmentSynapse/run.sh b/tests/0504_CompartmentSynapse/run.sh
new file mode 100755
index 0000000..705a780
--- /dev/null
+++ b/tests/0504_CompartmentSynapse/run.sh
@@ -0,0 +1,23 @@
+#!/bin/bash
+
+# work out our folder name
+test=${PWD##*/}          # to assign to a variable
+test=${test:-/}          # to correct for the case where PWD=/
+
+fail=0
+
+# run sbmodelr
+../../sbmodelr -s blob -n ../sources/1to2to3.gv ../sources/blob.cps 3 > output
+
+# check that the an error is issued
+if ! grep -q "ERROR: blob is a compartment ODE, but compartments cannot have synaptic links" output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = 1"
+fi
+
+if [ "$fail" = 0 ] ; then
+  printf 'PASS %s\n' "${test}"
+  rm output
+fi
+
+exit $fail