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This repository has been archived by the owner on Aug 5, 2021. It is now read-only.
I seem to be running into this issue with llama on an Ubuntu 18 machine
Traceback (most recent call last):
File "/home/tiba01/anaconda3/envs/llama/bin/find_ambiguities.py", line 4, in <module>
__import__('pkg_resources').run_script('llama==0.1', 'find_ambiguities.py')
File "/home/tiba01/anaconda3/envs/llama/lib/python3.6/site-packages/pkg_resources/__init__.py", line 665, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/tiba01/anaconda3/envs/llama/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1463, in run_script
exec(code, namespace, namespace)
File "/home/tiba01/anaconda3/envs/llama/lib/python3.6/site-packages/llama-0.1-py3.6.egg/EGG-INFO/scripts/find_ambiguities.py", line 62, in <module>
find_snps()
File "/home/tiba01/anaconda3/envs/llama/lib/python3.6/site-packages/llama-0.1-py3.6.egg/EGG-INFO/scripts/find_ambiguities.py", line 37, in find_snps
for row in reader:
File "/home/tiba01/anaconda3/envs/llama/lib/python3.6/csv.py", line 112, in __next__
row = next(self.reader)
_csv.Error: field larger than field limit (131072)
Error in rule ambiguities_at_snp_sites:
.
.
.
.
Exiting because a job execution failed. Look above for error message
I seem to be running into this issue with llama on an Ubuntu 18 machine
seems like this is a common issue:
field size larger than field limit
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