diff --git a/docs/content/feature/effectiveGenomeSize.rst b/docs/content/feature/effectiveGenomeSize.rst
index e988b18e..73c41ffa 100644
--- a/docs/content/feature/effectiveGenomeSize.rst
+++ b/docs/content/feature/effectiveGenomeSize.rst
@@ -23,6 +23,8 @@ The effective genome size for a number of genomes using this method is given bel
 +---------------+------------------+
 |GRCm38         |    2652783500    |
 +---------------+------------------+
+|GRCm39         |    2654621783    |
++---------------+------------------+
 |dm3            |    162367812     |
 +---------------+------------------+
 |dm6            |    142573017     |
@@ -44,18 +46,18 @@ These are then based on the read length.
 We can approximate these values for various read lengths using the `khmer program <https://khmer.readthedocs.io/en/latest/>`__ program and ``unique-kmers.py`` in particular.
 A table of effective genome sizes given a read length using this method is provided below:
 
-+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
-|Read length      | GRCh37          | GRCh38          | T2T/CHM13CAT_v2 | GRCm37          | GRCm38          | dm3             | dm6             | GRCz10          | GRCz11          | WBcel235        | TAIR10          |
-+=================+=================+=================+=================+=================+=================+=================+=================+=================+=================+=================+=================+
-|50               | 2685511454      | 2701495711      | 2725240337      | 2304947876      | 2308125299      | 130428510       | 125464678       | 1195445541      | 1197575653      | 95159402        | 114339094       |
-+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
-|75               | 2736124898      | 2747877702      | 2786136059      | 2404646149      | 2407883243      | 135004387       | 127324557       | 1251132611      | 1250812288      | 96945370        | 115317469       |
-+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
-|100              | 2776919708      | 2805636231      | 2814334875      | 2462480910      | 2467481008      | 139647132       | 129789773       | 1280188944      | 1280354977      | 98259898        | 118459858       |
-+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
-|150              | 2827436883      | 2862010428      | 2931551487      | 2489384085      | 2494787038      | 144307658       | 129940985       | 1312207019      | 1311832909      | 98721103        | 118504138       |
-+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
-|200              | 2855463800      | 2887553103      | 2936403235      | 2513019076      | 2520868989      | 148523810       | 132508963       | 1321355041      | 1322366338      | 98672558        | 117723393       |
-+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
-|250              | 2855044784      | 2898802627      | 2960856300      | 2528988583      | 2538590322      | 151901455       | 132900923       | 1339205109      | 1342093482      | 101271756       | 119585546       |
-+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
++-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
+|Read length      | GRCh37          | GRCh38          | T2T/CHM13CAT_v2 | GRCm37          | GRCm38          | GRCm39          | dm3             | dm6             | GRCz10          | GRCz11          | WBcel235        | TAIR10          |
++=================+=================+=================+=================+=================+=================+=================+=================+=================+=================+=================+=================+=================+
+|50               | 2685511454      | 2701495711      | 2725240337      | 2304947876      | 2308125299      | 2309746861      | 130428510       | 125464678       | 1195445541      | 1197575653      | 95159402        | 114339094       |
++-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
+|75               | 2736124898      | 2747877702      | 2786136059      | 2404646149      | 2407883243      | 2410055689      | 135004387       | 127324557       | 1251132611      | 1250812288      | 96945370        | 115317469       |
++-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
+|100              | 2776919708      | 2805636231      | 2814334875      | 2462480910      | 2467481008      | 2468088461      | 139647132       | 129789773       | 1280188944      | 1280354977      | 98259898        | 118459858       |
++-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
+|150              | 2827436883      | 2862010428      | 2931551487      | 2489384085      | 2494787038      | 2495461690      | 144307658       | 129940985       | 1312207019      | 1311832909      | 98721103        | 118504138       |
++-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
+|200              | 2855463800      | 2887553103      | 2936403235      | 2513019076      | 2520868989      | 2521902382      | 148523810       | 132508963       | 1321355041      | 1322366338      | 98672558        | 117723393       |
++-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
+|250              | 2855044784      | 2898802627      | 2960856300      | 2528988583      | 2538590322      | 2538633971      | 151901455       | 132900923       | 1339205109      | 1342093482      | 101271756       | 119585546       |
++-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+-----------------+
diff --git a/galaxy/wrapper/deepTools_macros.xml b/galaxy/wrapper/deepTools_macros.xml
index 49c8dd9e..62dd96ee 100755
--- a/galaxy/wrapper/deepTools_macros.xml
+++ b/galaxy/wrapper/deepTools_macros.xml
@@ -1,7 +1,7 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@TOOL_VERSION@">3.5.5</token>
+    <token name="@TOOL_VERSION@">3.5.6</token>
     <token name="@GALAXY_VERSION@">22.05</token>
     <xml name="requirements">
         <requirements>
diff --git a/pyproject.toml b/pyproject.toml
index 5a902d1d..84f14f48 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ requires = [
 
 [project]
 name = "deepTools"
-version = "3.5.5"
+version = "3.5.6"
 authors = [
     {name="Fidel Ramirez"},
     {name="Devon P Ryan"},