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Wondering why many sharp peaks created in the deeptools 2.0 heatmap profile #1348

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zx0223winner opened this issue Dec 6, 2024 · 1 comment
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@zx0223winner
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Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :

  • Search whether this issue (or a similar issue) has been solved before
    using the search tab above. Link the previous issue if appropriate below.

  • Paste your deepTools version (deeptools --version) and your python
    version (python --version) below.

  • Paste the full deepTools command that produces the issue below
    (ignore if you simply spotted the issue in the code/documentation).

  • Paste the output printed on screen from the command that produces the issue
    below (ignore if you simply spotted the issue in the code/documentation).

sample

computeMatrix reference-point
--referencePoint TSS
-b 3000
-a 3000
-R {input.bed}
-S {input.bigwig}
--binSize 50
-o {output}
--outFileSortedRegions {params.dir1} \

plotHeatmap
-m {input}
-out {output}
--interpolationMethod auto
--plotTitle {params}
--colorList 'yellow, red' 'green, blue' \

plotProfile
-m {input}
-out {output}
--plotTitle {params} \

@zx0223winner
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@WardDeb

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