diff --git a/docs/notebooks/geneGATer_tutorial.ipynb b/docs/notebooks/geneGATer_tutorial.ipynb index fbfb4ec..6d8b3bf 100644 --- a/docs/notebooks/geneGATer_tutorial.ipynb +++ b/docs/notebooks/geneGATer_tutorial.ipynb @@ -59,7 +59,6 @@ "import geneGATer as gt\n", "import squidpy as sq\n", "import numpy as np\n", - "import pandas as pd\n", "import scanpy as sc" ] }, @@ -235,7 +234,7 @@ }, "outputs": [], "source": [ - "np.save('squid_genes.npy', result[4]) " + "np.save('squid_genes.npy', result[4])" ] }, { @@ -621,7 +620,7 @@ " fdr_method=None,\n", " copy=True,\n", " interactions_params={\"resources\": \"CellPhoneDB\"},\n", - " threshold=0.1, seed=0, n_perms=10000, n_jobs=1, use_raw=False) \n", + " threshold=0.1, seed=0, n_perms=10000, n_jobs=1, use_raw=False)\n", "\n", "df = res[\"pvalues\"]\n", "print(\"Number of CellPhoneDB interactions:\", len(df))\n",