diff --git a/easybuild/easyconfigs/o/OpenMM-Torch/OpenMM-Torch-20240816-foss-2023a.eb b/easybuild/easyconfigs/o/OpenMM-Torch/OpenMM-Torch-20240816-foss-2023a.eb new file mode 100644 index 00000000000..697eafe4d11 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMM-Torch/OpenMM-Torch-20240816-foss-2023a.eb @@ -0,0 +1,49 @@ +easyblock = 'CMakeMake' + +name = 'OpenMM-Torch' +version = '20240816' +local_commit = '8893c0f' + +homepage = 'https://openmm.org/' +description = """ +OpenMM-Torch is an OpenMM plugin to define forces with neural networks. +The OpenMM-Torch package provides an interface to the PyTorch machine learning framework. +It lets you define new types of forces through PyTorch code. +""" + +toolchain = {'name': 'foss', 'version': '2023a'} +toolchainopts = {'cstd': 'c++17'} + +source_urls = ['https://github.com/openmm/%(namelower)s/archive'] +sources = ['%s.tar.gz' % local_commit] +checksums = ['c2abf0bfce61b6e2e1f42d27a89032b4b994f7d67eb238ddf1a7d299cae551bf'] + +builddependencies = [ + ('CMake', '3.26.3'), +] + +dependencies = [ + ('Python', '3.11.3'), + ('PyTorch', '2.1.2'), + ('OpenMM', '8.0.0'), +] + +preconfigopts = "sed -i 's|pip install |pip install --prefix=%(installdir)s |' %(start_dir)s/python/CMakeLists.txt && " + +configopts = '-DOPENMM_DIR="${EBROOTOPENMM}" ' +configopts += '-DPYTORCH_DIR="${EBROOTPYTORCH}/lib/python%(pyshortver)s/site-packages/torch"' + +postinstallcmds = ["make PythonInstall"] + +sanity_check_paths = { + 'files': ['lib/python%(pyshortver)s/site-packages/openmmtorch.py'], + 'dirs': ['lib', 'include'], +} + +sanity_check_commands = [ + "python -c 'import openmmtorch'", +] + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/o/OpenMMTools/OpenMMTools-0.23.1-foss-2023a.eb b/easybuild/easyconfigs/o/OpenMMTools/OpenMMTools-0.23.1-foss-2023a.eb new file mode 100644 index 00000000000..b99b5f61e3f --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMMTools/OpenMMTools-0.23.1-foss-2023a.eb @@ -0,0 +1,78 @@ +easyblock = 'PythonBundle' + +name = 'OpenMMTools' +version = '0.23.1' + +homepage = 'https://github.com/choderalab/openmmtools' +description = """A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine. +openmmtools is a Python library layer that sits on top of OpenMM to provide access to a variety of useful tools +for building full-featured molecular simulation packages. +""" + +toolchain = {'name': 'foss', 'version': '2023a'} +toolchainopts = {'usempi': True} + +builddependencies = [ + ('hatchling', '1.18.0'), +] + +dependencies = [ + ('Python', '3.11.3'), + ('SciPy-bundle', '2023.07'), + ('OpenMM', '8.0.0'), + ('netcdf4-python', '1.6.4'), + ('MDTraj', '1.9.9'), + ('PyYAML', '6.0'), + ('numba', '0.58.1'), +] + +use_pip = True +exts_list = [ + ('ipython_genutils', '0.2.0', { + 'checksums': ['eb2e116e75ecef9d4d228fdc66af54269afa26ab4463042e33785b887c628ba8'], + }), + ('pyrsistent', '0.20.0', { + 'checksums': ['4c48f78f62ab596c679086084d0dd13254ae4f3d6c72a83ffdf5ebdef8f265a4'], + }), + ('jupyter_core', '5.7.2', { + 'checksums': ['aa5f8d32bbf6b431ac830496da7392035d6f61b4f54872f15c4bd2a9c3f536d9'], + }), + ('traitlets', '5.14.3', { + 'checksums': ['9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7'], + }), + ('pymbar', '3.1', { + # pymbar 3.1 is not available via PyPI, see https://github.com/choderalab/pymbar/issues/475 + 'source_urls': ['https://github.com/choderalab/pymbar/archive/'], + 'sources': ['%(version)s.tar.gz'], + 'checksums': ['7a996e5d3fd8143378f9e18662483446a4a2fe7e57917511e96beb6b07fd6232'], + }), + ('mpiplus', '0.0.2', { + 'source_tmpl': 'v%(version)s.tar.gz', + 'source_urls': ['https://github.com/choderalab/mpiplus/archive/'], + 'checksums': ['5f051210b8cd321fdcbfa97a6e1606b63e6d6c7214c393bc04f93a8545b6d3a8'], + }), + ('sortedcontainers', '2.4.0', { + 'checksums': ['25caa5a06cc30b6b83d11423433f65d1f9d76c4c6a0c90e3379eaa43b9bfdb88'], + }), + ('hypothesis', '6.111.0', { + 'checksums': ['04d0703621d9fdd61c079a4dda07babbe7ebf6d34eee6ad9484a2af0ee721801'], + }), + (name, version, { + 'source_tmpl': '%(version)s.tar.gz', + 'source_urls': ['https://github.com/choderalab/openmmtools/archive/'], + 'checksums': ['9281f50896a91f3f9e1ea16f0636f2aff494287a51a4ec03ae8e26f1b8edaccc'], + # import check requires use of mpirun, handled via sanity_check_commands + 'modulename': False, + }), +] + +sanity_check_paths = { + 'files': ['bin/test-openmm-platforms'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +sanity_check_commands = ["%(mpi_cmd_prefix)s python -c 'import %(namelower)s'"] + +sanity_pip_check = True + +moduleclass = 'bio'