diff --git a/README.md b/README.md index cdcdbc6..9dba227 100644 --- a/README.md +++ b/README.md @@ -82,8 +82,8 @@ Convert the output of `AggregateSvPileup` to BEDPE. ```console fgsv AggregateSvPileupToBedPE \ - --input sample.svpileup.aggregate.txt \ - --output sample.svpileup.aggregate.bedpe + --input sample.svpileup.aggregate.txt \ + --output sample.svpileup.aggregate.bedpe ``` The tool [`fgsv AggregateSvPileupToBedPE`](https://github.com/fulcrumgenomics/fgsv/blob/main/docs/tools/AggregateSvPileupToBedPE.md) is used to convert the output of `AggregateSvPileup` to the [BEDPE format](https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format) so that it can be viewed in [IGV](https://igv.org/) and other BEDPE-supporting genome browsers. For example: