Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Show which offsets were chosen in log? #16

Open
mschubert opened this issue Feb 20, 2023 · 0 comments
Open

Show which offsets were chosen in log? #16

mschubert opened this issue Feb 20, 2023 · 0 comments

Comments

@mschubert
Copy link

(I've got a couple of small suggestions that would help me interpret and diagnose how guide-counter is running. I'll post them here as separate issues, please feel free to ignore/answer very slowly.)

When I run guide-counter with offset detection and --offset-min-fraction, the terminal log displays how many counts it finds at each position:

INFO In "/path/to/my.fastq.gz" examined 100000 reads for guide start position and matched 87811 (0.8781).
INFO my.fastq.gz read offsets: 0->86047, 1->11, 2->7, 3->11, 4->11, 5->8, 6->5, (etc, until position 58)

Would it be possible to add/modify a log entry that states which offsets passed the threshold? e.g.:

INFO my.fastq.gz X of Y possible read offsets chosen: 0, M, N
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant