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https://brc-analytics.dev.clevercanary.com/data/organisms
For example
Anopheles gambiae on the organisms page lists an "Assemblies" count of 7 but lists one assembly on the genomes page.
The text was updated successfully, but these errors were encountered:
I believe this may be because we are filtering out the extra genomes in the query to get the genomes from NCBI. The query looks like this:
From #157
https://api.ncbi.nlm.nih.gov/datasets/v2/genome/taxon/7165%2C5501/dataset_report?filters.assembly_source=refseq& filters.has_annotation=true& filters.exclude_paired_reports=true& filters.exclude_atypical=true& filters.assembly_level=scaffold& filters.assembly_level=chromosome&filters.assembly_level=complete_genome
So @nekrut should we take the counts from # Assemblies = (reports -> taxonomy -> counts[0]) e.g.
"counts": [ { "type": "COUNT_TYPE_ASSEMBLY", "count": 7 },
Or should we aggregate the count of assemblies returned when using the extra filters?
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NoopDog
nekrut
hunterckx
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https://brc-analytics.dev.clevercanary.com/data/organisms
For example
Anopheles gambiae on the organisms page lists an "Assemblies" count of 7 but lists one assembly on the genomes page.
The text was updated successfully, but these errors were encountered: