From e3f8c16a5d15357b449e365ff5a2a1be5bac1ff8 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Wed, 20 Sep 2023 21:17:30 +0200 Subject: [PATCH] Drop multiqc html test, check if 'Estimated Genome size' works as int --- .../VGP-WF3-Assembly/Assembly-(WF3)-tests.yml | 10 +--------- 1 file changed, 1 insertion(+), 9 deletions(-) diff --git a/workflows/VGP-assembly-v2/VGP-WF3-Assembly/Assembly-(WF3)-tests.yml b/workflows/VGP-assembly-v2/VGP-WF3-Assembly/Assembly-(WF3)-tests.yml index f1bec29f9..f0867d2ee 100644 --- a/workflows/VGP-assembly-v2/VGP-WF3-Assembly/Assembly-(WF3)-tests.yml +++ b/workflows/VGP-assembly-v2/VGP-WF3-Assembly/Assembly-(WF3)-tests.yml @@ -20,11 +20,6 @@ Name of primary assembly: Primary Name of alternate assembly: Alternate outputs: - multiqc html report: - asserts: - has_size: - value : 345000000 - delta: 10000000 Hifiasm Primary assembly: asserts: has_n_lines: @@ -37,10 +32,7 @@ asserts: has_line: line: "# scaffolds 2" - # Estimated Genome size: - # asserts: - # has_line: - # line: "2288021" + Estimated Genome size: 2288021 Assembly Stats on Primary assembly: asserts: has_line: