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Incorrect relation direction for has_input #41

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ValWood opened this issue Jun 18, 2024 · 2 comments
Open

Incorrect relation direction for has_input #41

ValWood opened this issue Jun 18, 2024 · 2 comments
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@ValWood
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ValWood commented Jun 18, 2024

In our glycolysis model,
http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel:663d668500002302

hexose is annotated as input_of hxk1 & hxk2(the only option in Noctua)

Screenshot 2024-06-18 at 18 05 59

but in the widget, this comes out as has_input
Screenshot 2024-06-18 at 18 07 11

I don't object to the inversion of the relation, but the "arrow" appears to be the wrong way around.
I would read this diagram as "D-hexose" has_input hxk2 rather than hxk2 has_input hexose

Has_output at the end of the model is fine.

@ValWood ValWood changed the title Incorect relation direction for has_input Incorrect relation direction for has_input Jun 18, 2024
@vanaukenk vanaukenk added the high priority requires immediate attention label Jun 25, 2024
@ValWood
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ValWood commented Oct 11, 2024

This issue isn't fixed in AmiGO GO-cam-viz viewer either

@vanaukenk
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Update the legend for 'has input' to be 'input of' to fix this.

@vanaukenk vanaukenk moved this from Todo to In Progress in Pathway Viewer improvements and bug fixes Jan 7, 2025
@vanaukenk vanaukenk moved this from In Progress to Ready for Noctua production in Pathway Viewer improvements and bug fixes Jan 7, 2025
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