From 33c4e7f2ba82fdb28ac992d0fda5a7aecc391631 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sebastian=20Sch=C3=B6nherr?= Date: Wed, 31 Jul 2024 16:03:26 +0200 Subject: [PATCH] Prepare release v2.0.0-rc2 --- cloudgene.hla.yaml | 2 +- cloudgene.pgs.yaml | 2 +- cloudgene.yaml | 2 +- nextflow.config | 4 ++-- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/cloudgene.hla.yaml b/cloudgene.hla.yaml index 7d752c0..916045c 100644 --- a/cloudgene.hla.yaml +++ b/cloudgene.hla.yaml @@ -3,7 +3,7 @@ name: HLA Imputation description: "

Thank you for using our multi-ethnic HLA imputation panel, built from ~20,000 whole genome sequencing samples from five global populations.

Please cite this manuscript if you would like to include imputed results from the panel in your work:

Luo, Y., Kanai, M., Choi, W., Li, X., Yamamoto, K., Ogawa, K., Gutierrez-Arcelus, M., Gregersen, P. K., Stuart, P. E., Elder, J. T., Fellay, J., Carrington, M., Haas, D. W., Guo, X., Palmer, N. D., Chen, Y.-D. I., Rotter, J. I., Taylor, K. D., Rich, S., … Raychaudhuri, S. (2020). A high-resolution HLA reference panel capturing global population diversity enables multi-ethnic fine-mapping in HIV host response. https://doi.org/10.1101/2020.07.16.20155606

If your input data is GRCh37/hg19 please ensure chromosomes are encoded without prefix (e.g. 20).
If your input data is GRCh38hg38 please ensure chromosomes are encoded with prefix 'chr' (e.g. chr20).

" -version: 2.0.0-rc1 +version: 2.0.0-rc2 website: https://imputationserver.readthedocs.io category: Application submitButton: Start Imputation diff --git a/cloudgene.pgs.yaml b/cloudgene.pgs.yaml index 3a3d1bd..82e44f5 100644 --- a/cloudgene.pgs.yaml +++ b/cloudgene.pgs.yaml @@ -1,7 +1,7 @@ id: imputationserver2-pgs name: Polygenic Score Calculation description: "You can upload genotyped data and the application imputes your genotypes, performs ancestry estimation and finally calculates Polygenic Risk Scores.

No dataset at hand? No problem, download our example dataset: 50-samples.zip

" -version: 2.0.0-rc1 +version: 2.0.0-rc2 website: https://imputationserver.readthedocs.io category: Application submitButton: Start Calculation diff --git a/cloudgene.yaml b/cloudgene.yaml index 1fa248a..117921a 100644 --- a/cloudgene.yaml +++ b/cloudgene.yaml @@ -1,7 +1,7 @@ id: imputationserver2 name: Genotype Imputation description: This is the new Michigan Imputation Server Pipeline using Minimac4. Documentation can be found here.

If your input data is GRCh37/hg19 please ensure chromosomes are encoded without prefix (e.g. 20).
If your input data is GRCh38hg38 please ensure chromosomes are encoded with prefix 'chr' (e.g. chr20). -version: 2.0.0-rc1 +version: 2.0.0-rc2 website: https://imputationserver.readthedocs.io category: Application submitButton: Start Imputation diff --git a/nextflow.config b/nextflow.config index b4e7853..bae7b92 100644 --- a/nextflow.config +++ b/nextflow.config @@ -1,6 +1,6 @@ manifest { name = 'imputationserver2' - version = 'v2.0.0-rc1' + version = 'v2.0.0-rc2' description = 'Genotype Imputation Server 2' author = 'Lukas Forer & Sebastian Schönherr' homePage = 'https://github.com/genepi/imputationserver2' @@ -95,7 +95,7 @@ profiles { docker.enabled = true singularity.enabled = false - process.container = 'quay.io/genepi/imputationserver2:v2.0.0-rc1' + process.container = 'quay.io/genepi/imputationserver2:v2.0.0-rc2' test { includeConfig 'conf/test.config'