From 6e8b487ad77bbf84eb4124678043a43e2755ea78 Mon Sep 17 00:00:00 2001 From: tefirman Date: Tue, 17 Sep 2024 04:53:04 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20getwilds?= =?UTF-8?q?/rcromwell@6178c82259e8101821a76a5a6e4b8365750df232=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- CODE_OF_CONDUCT.html | 2 +- LICENSE.html | 2 +- articles/rcromwell.html | 2 +- authors.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/check_url.html | 2 +- reference/cromwell_abort.html | 2 +- reference/cromwell_backends.html | 2 +- reference/cromwell_cache.html | 2 +- reference/cromwell_call.html | 2 +- reference/cromwell_config.html | 2 +- reference/cromwell_failures.html | 2 +- reference/cromwell_glob.html | 2 +- reference/cromwell_jobs.html | 2 +- reference/cromwell_labels.html | 2 +- reference/cromwell_logs.html | 2 +- reference/cromwell_outputs.html | 2 +- reference/cromwell_settings.html | 2 +- reference/cromwell_submit_batch.html | 2 +- reference/cromwell_timing.html | 2 +- reference/cromwell_validate.html | 2 +- reference/cromwell_version.html | 2 +- reference/cromwell_workflow.html | 2 +- reference/cw_url.html | 2 +- reference/rcromwell-package.html | 2 +- reference/try_auth_header.html | 2 +- reference/workflow_inputs.html | 2 +- reference/workflow_options.html | 2 +- 29 files changed, 29 insertions(+), 29 deletions(-) diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 04cfd0b..be75456 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -30,7 +30,7 @@

Contributor Covenant Code of Conduct

- Source: .github/CODE_OF_CONDUCT.md + Source: .github/CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index 67c6cf5..06bb3ab 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -30,7 +30,7 @@

MIT License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/articles/rcromwell.html b/articles/rcromwell.html index 952c97f..134d048 100644 --- a/articles/rcromwell.html +++ b/articles/rcromwell.html @@ -54,7 +54,7 @@

Getting Started

- Source: vignettes/rcromwell.Rmd + Source: vignettes/rcromwell.Rmd
rcromwell.Rmd
diff --git a/authors.html b/authors.html index 1301c75..57b8958 100644 --- a/authors.html +++ b/authors.html @@ -51,7 +51,7 @@

Authors

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Paguirigan A, Chamberlain S (2024). rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell. diff --git a/news/index.html b/news/index.html index 58cdfe4..be29619 100644 --- a/news/index.html +++ b/news/index.html @@ -30,7 +30,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index e5b6240..0b9e31d 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.1.0 pkgdown_sha: ~ articles: rcromwell: rcromwell.html -last_built: 2024-09-17T04:45Z +last_built: 2024-09-17T04:52Z urls: reference: http://getwilds.org/rcromwell/reference article: http://getwilds.org/rcromwell/articles diff --git a/reference/check_url.html b/reference/check_url.html index 4d4b992..5bd4c14 100644 --- a/reference/check_url.html +++ b/reference/check_url.html @@ -30,7 +30,7 @@

Check a url

- Source: R/http.R + Source: R/http.R
check_url.Rd
diff --git a/reference/cromwell_abort.html b/reference/cromwell_abort.html index 8872a44..7095198 100644 --- a/reference/cromwell_abort.html +++ b/reference/cromwell_abort.html @@ -30,7 +30,7 @@

Abort a workflow job on Cromwell

- Source: R/cromwellAbort.R + Source: R/cromwellAbort.R
cromwell_abort.Rd
diff --git a/reference/cromwell_backends.html b/reference/cromwell_backends.html index 45d47cd..7b42460 100644 --- a/reference/cromwell_backends.html +++ b/reference/cromwell_backends.html @@ -30,7 +30,7 @@

Get the available backends of a Cromwell server

- Source: R/cromwellBackends.R + Source: R/cromwellBackends.R
cromwell_backends.Rd
diff --git a/reference/cromwell_cache.html b/reference/cromwell_cache.html index dd6d72a..2f63cb4 100644 --- a/reference/cromwell_cache.html +++ b/reference/cromwell_cache.html @@ -30,7 +30,7 @@

Pull Cromwell Call Caching Data

- Source: R/cromwellCache.R + Source: R/cromwellCache.R
cromwell_cache.Rd
diff --git a/reference/cromwell_call.html b/reference/cromwell_call.html index 1ac1055..98442d4 100644 --- a/reference/cromwell_call.html +++ b/reference/cromwell_call.html @@ -30,7 +30,7 @@

Retrieve metadata for the calls made in a Cromwell workflow job

- Source: R/cromwellCall.R + Source: R/cromwellCall.R
cromwell_call.Rd
diff --git a/reference/cromwell_config.html b/reference/cromwell_config.html index abc0926..0c3f242 100644 --- a/reference/cromwell_config.html +++ b/reference/cromwell_config.html @@ -30,7 +30,7 @@

Cromwell Configuration

- Source: R/settings.R + Source: R/settings.R
cromwell_config.Rd
diff --git a/reference/cromwell_failures.html b/reference/cromwell_failures.html index 596667f..b65bc85 100644 --- a/reference/cromwell_failures.html +++ b/reference/cromwell_failures.html @@ -30,7 +30,7 @@

Pull metadata for the failed calls made in a Cromwell workflow job

- Source: R/cromwellFailures.R + Source: R/cromwellFailures.R
cromwell_failures.Rd
diff --git a/reference/cromwell_glob.html b/reference/cromwell_glob.html index 21d76fd..7b83cff 100644 --- a/reference/cromwell_glob.html +++ b/reference/cromwell_glob.html @@ -30,7 +30,7 @@

Pull a glob of metadata for a specific Cromwell workflow job

- Source: R/cromwellGlob.R + Source: R/cromwellGlob.R
cromwell_glob.Rd
diff --git a/reference/cromwell_jobs.html b/reference/cromwell_jobs.html index ca42891..32daff4 100644 --- a/reference/cromwell_jobs.html +++ b/reference/cromwell_jobs.html @@ -30,7 +30,7 @@

Requests metadata about Cromwell workflow jobs during a time period specified

- Source: R/cromwellJobs.R + Source: R/cromwellJobs.R
cromwell_jobs.Rd
diff --git a/reference/cromwell_labels.html b/reference/cromwell_labels.html index 58154ed..997c9a9 100644 --- a/reference/cromwell_labels.html +++ b/reference/cromwell_labels.html @@ -30,7 +30,7 @@

Cromwell labels for a workflow

- Source: R/labels.R + Source: R/labels.R
cromwell_labels.Rd
diff --git a/reference/cromwell_logs.html b/reference/cromwell_logs.html index c2bd4d0..3eceadb 100644 --- a/reference/cromwell_logs.html +++ b/reference/cromwell_logs.html @@ -30,7 +30,7 @@

Gets logs for a workflow in Cromwell

- Source: R/cromwellLogs.R + Source: R/cromwellLogs.R
cromwell_logs.Rd
diff --git a/reference/cromwell_outputs.html b/reference/cromwell_outputs.html index 8f6adf6..8137a33 100644 --- a/reference/cromwell_outputs.html +++ b/reference/cromwell_outputs.html @@ -30,7 +30,7 @@

Gets outputs for a workflow in Cromwell

- Source: R/cromwellOutputs.R + Source: R/cromwellOutputs.R
cromwell_outputs.Rd
diff --git a/reference/cromwell_settings.html b/reference/cromwell_settings.html index c8db154..e6883b3 100644 --- a/reference/cromwell_settings.html +++ b/reference/cromwell_settings.html @@ -30,7 +30,7 @@

Cromwell Settings

- Source: R/settings.R + Source: R/settings.R
cromwell_settings.Rd
diff --git a/reference/cromwell_submit_batch.html b/reference/cromwell_submit_batch.html index 08a0870..eb0cf9b 100644 --- a/reference/cromwell_submit_batch.html +++ b/reference/cromwell_submit_batch.html @@ -32,7 +32,7 @@

Submit a workflow job to Cromwell

- Source: R/cromwellSubmitBatch.R + Source: R/cromwellSubmitBatch.R
cromwell_submit_batch.Rd
diff --git a/reference/cromwell_timing.html b/reference/cromwell_timing.html index df2b878..60ffa44 100644 --- a/reference/cromwell_timing.html +++ b/reference/cromwell_timing.html @@ -30,7 +30,7 @@

Get a timing diagram for a Cromwell workflow

- Source: R/cromwellTiming.R + Source: R/cromwellTiming.R
cromwell_timing.Rd
diff --git a/reference/cromwell_validate.html b/reference/cromwell_validate.html index a91316d..ed34bdc 100644 --- a/reference/cromwell_validate.html +++ b/reference/cromwell_validate.html @@ -30,7 +30,7 @@

Validates a workflow for submission

- Source: R/cromwellValidate.R + Source: R/cromwellValidate.R
cromwell_validate.Rd
diff --git a/reference/cromwell_version.html b/reference/cromwell_version.html index 11c7070..91c0a31 100644 --- a/reference/cromwell_version.html +++ b/reference/cromwell_version.html @@ -30,7 +30,7 @@

Get the version of a Cromwell server

- Source: R/cromwellVersion.R + Source: R/cromwellVersion.R
cromwell_version.Rd
diff --git a/reference/cromwell_workflow.html b/reference/cromwell_workflow.html index 614e4b9..3edc2d2 100644 --- a/reference/cromwell_workflow.html +++ b/reference/cromwell_workflow.html @@ -32,7 +32,7 @@

Pull metadata for a specific Cromwell workflow job

- Source: R/cromwellWorkflow.R + Source: R/cromwellWorkflow.R
cromwell_workflow.Rd
diff --git a/reference/cw_url.html b/reference/cw_url.html index 46fc3ca..a0dbd44 100644 --- a/reference/cw_url.html +++ b/reference/cw_url.html @@ -30,7 +30,7 @@

Look for Cromwell URL as the env var CROMWELLURL

- Source: R/http.R + Source: R/http.R
cw_url.Rd
diff --git a/reference/rcromwell-package.html b/reference/rcromwell-package.html index b78be39..a248e5f 100644 --- a/reference/rcromwell-package.html +++ b/reference/rcromwell-package.html @@ -30,7 +30,7 @@

rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell

- Source: R/rcromwell-package.R + Source: R/rcromwell-package.R
rcromwell-package.Rd
diff --git a/reference/try_auth_header.html b/reference/try_auth_header.html index 09b3faa..9ba12f0 100644 --- a/reference/try_auth_header.html +++ b/reference/try_auth_header.html @@ -30,7 +30,7 @@

Add Authorization header

- Source: R/http.R + Source: R/http.R
try_auth_header.Rd
diff --git a/reference/workflow_inputs.html b/reference/workflow_inputs.html index 1897e85..ccbc9cc 100644 --- a/reference/workflow_inputs.html +++ b/reference/workflow_inputs.html @@ -30,7 +30,7 @@

Pull the workflow inputs provided for a Cromwell workflow job

- Source: R/cromUtils.R + Source: R/cromUtils.R
workflow_inputs.Rd
diff --git a/reference/workflow_options.html b/reference/workflow_options.html index a93b060..a6b32d9 100644 --- a/reference/workflow_options.html +++ b/reference/workflow_options.html @@ -30,7 +30,7 @@

Pull the workflow options provided for a Cromwell workflow job

- Source: R/cromUtils.R + Source: R/cromUtils.R
workflow_options.Rd