diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 9a030a3..33f195c 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -30,7 +30,7 @@

Contributor Covenant Code of Conduct

- Source: .github/CODE_OF_CONDUCT.md + Source: .github/CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index 5f3f763..5ae0ccc 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -30,7 +30,7 @@

MIT License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/articles/rcromwell.html b/articles/rcromwell.html index 7a698ef..fed3aea 100644 --- a/articles/rcromwell.html +++ b/articles/rcromwell.html @@ -54,7 +54,7 @@

Getting Started

- Source: vignettes/rcromwell.Rmd + Source: vignettes/rcromwell.Rmd
rcromwell.Rmd
diff --git a/authors.html b/authors.html index 07e73a7..4258b34 100644 --- a/authors.html +++ b/authors.html @@ -51,7 +51,7 @@

Authors

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Paguirigan A, Chamberlain S (2024). rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell. diff --git a/news/index.html b/news/index.html index 7799630..9858450 100644 --- a/news/index.html +++ b/news/index.html @@ -30,7 +30,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index 6007951..84ac62a 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.1.0 pkgdown_sha: ~ articles: rcromwell: rcromwell.html -last_built: 2024-08-08T17:33Z +last_built: 2024-08-08T17:35Z urls: reference: http://getwilds.org/rcromwell/reference article: http://getwilds.org/rcromwell/articles diff --git a/reference/check_url.html b/reference/check_url.html index f6159e1..fd41f68 100644 --- a/reference/check_url.html +++ b/reference/check_url.html @@ -30,7 +30,7 @@

Check a url

- Source: R/http.R + Source: R/http.R
check_url.Rd
diff --git a/reference/cromwell_abort.html b/reference/cromwell_abort.html index f206376..4606da3 100644 --- a/reference/cromwell_abort.html +++ b/reference/cromwell_abort.html @@ -30,7 +30,7 @@

Abort a workflow job on Cromwell

- Source: R/cromwellAbort.R + Source: R/cromwellAbort.R
cromwell_abort.Rd
diff --git a/reference/cromwell_backends.html b/reference/cromwell_backends.html index a07981b..cf9ac35 100644 --- a/reference/cromwell_backends.html +++ b/reference/cromwell_backends.html @@ -30,7 +30,7 @@

Get the available backends of a Cromwell server

- Source: R/cromwellBackends.R + Source: R/cromwellBackends.R
cromwell_backends.Rd
diff --git a/reference/cromwell_cache.html b/reference/cromwell_cache.html index a87cdbd..95e4987 100644 --- a/reference/cromwell_cache.html +++ b/reference/cromwell_cache.html @@ -30,7 +30,7 @@

Pull Cromwell Call Caching Data

- Source: R/cromwellCache.R + Source: R/cromwellCache.R
cromwell_cache.Rd
diff --git a/reference/cromwell_call.html b/reference/cromwell_call.html index 0babdbb..0ec820f 100644 --- a/reference/cromwell_call.html +++ b/reference/cromwell_call.html @@ -30,7 +30,7 @@

Retrieve metadata for the calls made in a Cromwell workflow job

- Source: R/cromwellCall.R + Source: R/cromwellCall.R
cromwell_call.Rd
diff --git a/reference/cromwell_config.html b/reference/cromwell_config.html index aa83b46..af383b5 100644 --- a/reference/cromwell_config.html +++ b/reference/cromwell_config.html @@ -30,7 +30,7 @@

Cromwell Configuration

- Source: R/settings.R + Source: R/settings.R
cromwell_config.Rd
diff --git a/reference/cromwell_failures.html b/reference/cromwell_failures.html index 9491840..386c667 100644 --- a/reference/cromwell_failures.html +++ b/reference/cromwell_failures.html @@ -30,7 +30,7 @@

Pull metadata for the failed calls made in a Cromwell workflow job

- Source: R/cromwellFailures.R + Source: R/cromwellFailures.R
cromwell_failures.Rd
diff --git a/reference/cromwell_glob.html b/reference/cromwell_glob.html index 98929b9..7db3b95 100644 --- a/reference/cromwell_glob.html +++ b/reference/cromwell_glob.html @@ -30,7 +30,7 @@

Pull a glob of metadata for a specific Cromwell workflow job

- Source: R/cromwellGlob.R + Source: R/cromwellGlob.R
cromwell_glob.Rd
diff --git a/reference/cromwell_jobs.html b/reference/cromwell_jobs.html index c251ff7..569c6ae 100644 --- a/reference/cromwell_jobs.html +++ b/reference/cromwell_jobs.html @@ -30,7 +30,7 @@

Requests metadata about Cromwell workflow jobs during a time period specified

- Source: R/cromwellJobs.R + Source: R/cromwellJobs.R
cromwell_jobs.Rd
diff --git a/reference/cromwell_labels.html b/reference/cromwell_labels.html index 19b0c0d..a19e81c 100644 --- a/reference/cromwell_labels.html +++ b/reference/cromwell_labels.html @@ -30,7 +30,7 @@

Cromwell labels for a workflow

- Source: R/labels.R + Source: R/labels.R
cromwell_labels.Rd
diff --git a/reference/cromwell_logs.html b/reference/cromwell_logs.html index e9aa24c..930748a 100644 --- a/reference/cromwell_logs.html +++ b/reference/cromwell_logs.html @@ -30,7 +30,7 @@

Gets logs for a workflow in Cromwell

- Source: R/cromwellLogs.R + Source: R/cromwellLogs.R
cromwell_logs.Rd
diff --git a/reference/cromwell_outputs.html b/reference/cromwell_outputs.html index 0eac970..80a864d 100644 --- a/reference/cromwell_outputs.html +++ b/reference/cromwell_outputs.html @@ -30,7 +30,7 @@

Gets outputs for a workflow in Cromwell

- Source: R/cromwellOutputs.R + Source: R/cromwellOutputs.R
cromwell_outputs.Rd
diff --git a/reference/cromwell_settings.html b/reference/cromwell_settings.html index a044b4f..c4d36ab 100644 --- a/reference/cromwell_settings.html +++ b/reference/cromwell_settings.html @@ -30,7 +30,7 @@

Cromwell Settings

- Source: R/settings.R + Source: R/settings.R
cromwell_settings.Rd
diff --git a/reference/cromwell_submit_batch.html b/reference/cromwell_submit_batch.html index 0306c23..e785cd3 100644 --- a/reference/cromwell_submit_batch.html +++ b/reference/cromwell_submit_batch.html @@ -32,7 +32,7 @@

Submit a workflow job to Cromwell

- Source: R/cromwellSubmitBatch.R + Source: R/cromwellSubmitBatch.R
cromwell_submit_batch.Rd
diff --git a/reference/cromwell_timing.html b/reference/cromwell_timing.html index e6b14d7..4e87743 100644 --- a/reference/cromwell_timing.html +++ b/reference/cromwell_timing.html @@ -30,7 +30,7 @@

Get a timing diagram for a Cromwell workflow

- Source: R/cromwellTiming.R + Source: R/cromwellTiming.R
cromwell_timing.Rd
diff --git a/reference/cromwell_validate.html b/reference/cromwell_validate.html index 3a1e623..b019817 100644 --- a/reference/cromwell_validate.html +++ b/reference/cromwell_validate.html @@ -30,7 +30,7 @@

Validates a workflow for submission

- Source: R/cromwellValidate.R + Source: R/cromwellValidate.R
cromwell_validate.Rd
diff --git a/reference/cromwell_version.html b/reference/cromwell_version.html index e18f882..55dcb11 100644 --- a/reference/cromwell_version.html +++ b/reference/cromwell_version.html @@ -30,7 +30,7 @@

Get the version of a Cromwell server

- Source: R/cromwellVersion.R + Source: R/cromwellVersion.R
cromwell_version.Rd
diff --git a/reference/cromwell_workflow.html b/reference/cromwell_workflow.html index 7d5e149..cae442b 100644 --- a/reference/cromwell_workflow.html +++ b/reference/cromwell_workflow.html @@ -32,7 +32,7 @@

Pull metadata for a specific Cromwell workflow job

- Source: R/cromwellWorkflow.R + Source: R/cromwellWorkflow.R
cromwell_workflow.Rd
diff --git a/reference/cw_url.html b/reference/cw_url.html index f01fcf8..7370e19 100644 --- a/reference/cw_url.html +++ b/reference/cw_url.html @@ -30,7 +30,7 @@

Look for Cromwell URL as the env var CROMWELLURL

- Source: R/http.R + Source: R/http.R
cw_url.Rd
diff --git a/reference/rcromwell-package.html b/reference/rcromwell-package.html index d5969dd..f3d16d3 100644 --- a/reference/rcromwell-package.html +++ b/reference/rcromwell-package.html @@ -30,7 +30,7 @@

rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell

- Source: R/rcromwell-package.R + Source: R/rcromwell-package.R
rcromwell-package.Rd
diff --git a/reference/try_auth_header.html b/reference/try_auth_header.html index cf91acc..6fd2513 100644 --- a/reference/try_auth_header.html +++ b/reference/try_auth_header.html @@ -30,7 +30,7 @@

Add Authorization header

- Source: R/http.R + Source: R/http.R
try_auth_header.Rd
diff --git a/reference/workflow_inputs.html b/reference/workflow_inputs.html index a7bda42..a47aab3 100644 --- a/reference/workflow_inputs.html +++ b/reference/workflow_inputs.html @@ -30,7 +30,7 @@

Pull the workflow inputs provided for a Cromwell workflow job

- Source: R/cromUtils.R + Source: R/cromUtils.R
workflow_inputs.Rd
diff --git a/reference/workflow_options.html b/reference/workflow_options.html index 54aa033..538bebf 100644 --- a/reference/workflow_options.html +++ b/reference/workflow_options.html @@ -30,7 +30,7 @@

Pull the workflow options provided for a Cromwell workflow job

- Source: R/cromUtils.R + Source: R/cromUtils.R
workflow_options.Rd