From c9298c66ca859216533bf60387296ad8602758d0 Mon Sep 17 00:00:00 2001 From: JeanneClement Date: Fri, 1 Apr 2022 13:54:04 +0200 Subject: [PATCH] version 0.2.1 --- NEWS.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/NEWS.md b/NEWS.md index 5de1b1e9..55d4f73f 100644 --- a/NEWS.md +++ b/NEWS.md @@ -14,7 +14,6 @@ * New function [`plot_associations`](https://ecology.ghislainv.fr/jSDM/reference/plot_associations.html) to plot species-species associations. # jSDM 0.1.1 -* Add Code of conduct and Contributing section * Use of `roxygen2` for documentation and NAMESPACE * Rename `jSDM_binomial_probit_block` the function `jSDM_probit_block`. * New function `jSDM_binomial_probit_block_long_format` for fitting joint species distribution models from presence-absence data in long format able to handle missing observations, multiple visits at sites and to integer species traits as explanatory variables. @@ -26,6 +25,7 @@ * Add datasets ([`mosquitos`](https://ecology.ghislainv.fr/jSDM/reference/mosquitos.html), [`fungi`](https://ecology.ghislainv.fr/jSDM/reference/fungi.html), [`eucalypts`](https://ecology.ghislainv.fr/jSDM/reference/eucalypts.html), [`birds`](https://ecology.ghislainv.fr/jSDM/reference/birds.html), [`mites`](https://ecology.ghislainv.fr/jSDM/reference/mites.html), [`aravo`](https://ecology.ghislainv.fr/jSDM/reference/aravo.html)). * Seven new vignettes ([Bayesian inference methods](https://ecology.ghislainv.fr/jSDM/articles/proof.html), [Poisson log-linear regression](https://ecology.ghislainv.fr/jSDM/articles/jSDM_poisson_log.html), [Bernoulli probit regression](https://ecology.ghislainv.fr/jSDM/articles/jSDM_binomial_probit.html), [Bernoulli probit regression with missing data and species traits](https://ecology.ghislainv.fr/jSDM/articles/jSDM_binomial_probit_long_format.html), [Binomial logistic regression](https://ecology.ghislainv.fr/jSDM/articles/jSDM_binomial_logit.html), [Running jSDM in parallel](https://ecology.ghislainv.fr/jSDM/articles/jSDM_in_parallel.html), [Comparing SDMs and JSDMs](https://ecology.ghislainv.fr/jSDM/articles/SDM_JSDM.html) and [Comparison jSDM-Hmsc](https://ecology.ghislainv.fr/jSDM/articles/jSDM_Hmsc.html)) are available. * Complete and correct the vignette [Comparison jSDM-boral](https://ecology.ghislainv.fr/jSDM/articles/jSDM_boral.html). +* Add Code of conduct and Contributing section * New package website available on GitHub: . # jSDM 0.1.0 @@ -34,6 +34,6 @@ * Use of Rcpp and C++ code for Gibbs sampling * Use of GSL (RcppGSL) for random draws * Use of Armadillo (RcppArmadillo) for vector and matrix operations -* Functions to fit models from Warton et al. 2014 _Trends in Ecology and Evolution_ (doi:10.1016/j.tree.2015.09.007). +* Functions to fit models from Warton et al. 2014 _Trends in Ecology and Evolution_ ([doi:10.1016/j.tree.2015.09.007](https://doi.org/10.1016/j.tree.2015.09.007)). * We use `pkgdown` to build package website. * Package website available on GitHub: .