From 875516ecdc8a742190c6e2e2ef61f87a2c080a25 Mon Sep 17 00:00:00 2001 From: Will Gammerdinger Date: Mon, 9 Dec 2024 15:32:15 -0500 Subject: [PATCH] Added a sentence about VISTA enchancers --- lessons/06_peak_visualization_with_igv.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lessons/06_peak_visualization_with_igv.md b/lessons/06_peak_visualization_with_igv.md index e675883..3e551bf 100644 --- a/lessons/06_peak_visualization_with_igv.md +++ b/lessons/06_peak_visualization_with_igv.md @@ -192,7 +192,7 @@ After loading the cKO IP replicate 3 BigWig track, your IGV session should look #### Loading tracks from URL -Alternatively to loading a track from a local file, we can also load tracks from a URL. In this case, we will load [VISTA enchancers](https://enhancer.lbl.gov/vista/) that are availible for the Mouse genome on the [UCSC Genome Browser](https://genome.ucsc.edu/). The file uses bigBed format, which is used with hosted genome browsers liike the UCSC browser which allows the browser only load the relevant sections of genomes at a time and is less computaitonally intensive on a public genome browser. More information on bigBed can be found on the [UCSC page about bigBed](https://genome.ucsc.edu/goldenpath/help/bigBed.html). In order to load a file from a URL, left-click on File in the top-left and select Load from File.... Next, enter this URL into the URL blank: +Alternatively to loading a track from a local file, we can also load tracks from a URL. In this case, we will load [VISTA enchancers](https://enhancer.lbl.gov/vista/) that are availible for the Mouse genome on the [UCSC Genome Browser](https://genome.ucsc.edu/). The VISTA enhancers are curated set of computaitnally predicted and *in vivo* validated enhancer elements in mouse. The file uses bigBed format, which is used with hosted genome browsers liike the UCSC browser which allows the browser only load the relevant sections of genomes at a time and is less computaitonally intensive on a public genome browser. More information on bigBed can be found on the [UCSC page about bigBed](https://genome.ucsc.edu/goldenpath/help/bigBed.html). In order to load a file from a URL, left-click on File in the top-left and select Load from File.... Next, enter this URL into the URL blank: ``` https://hgdownload.soe.ucsc.edu/gbdb/mm39/vistaEnhancers/vistaEnhancers.bb