diff --git a/workflow/Snakefile b/workflow/Snakefile index d916e4c..3f9510a 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -165,7 +165,7 @@ rule refgenome: "minimal" params: extra=( - lambda wildcards: f"append maxindel=200 usemodulo slow k=12 nodisk RGPL={PLATFORM} RGID={wildcards.sample} RGSM={wildcards.sample}" + lambda wildcards: f"append maxindel=200 strictmaxindel usemodulo slow k=12 nodisk RGPL={PLATFORM} RGID={wildcards.sample} RGSM={wildcards.sample}" ), resources: runtime=120,