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INSTALL
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Brief installation instructions
HMMER 3.1b2; February 2015
-------------------------------------------------------------
These are quick installation instructions. For complete documentation,
including customization and troubleshooting, please see the
Installation chapter in the HMMER User's Guide (Userguide.pdf).
-------------------------------------------------------------
Starting from a distribution "with binaries", such as
hmmer-3.1b2-linux-intel-x86_64.tar.gz:
uncompress: uncompress hmmer-3.1b2-xyz.tar.gz
unpack: tar xf hmmer-3.1b2-xyz.tar
move into new directory: cd hmmer-3.1b2-xyz
The pre-compiled binaries are found in the directory ./binaries.
You may copy these into a directory of your choosing, or simply add
this directory to your $PATH variable.
-------------------------------------------------------------
Starting from a source distribution, hmmer-3.1b2.tar.gz:
uncompress: uncompress hmmer-3.1b2.tar.gz
unpack: tar xf hmmer-3.1b2.tar
move into new directory: cd hmmer-3.1b2
configure: ./configure
build: make
automated tests: make check
automated install: make install
-------------------------------------------------------------
HMMER is developed primarily on Linux and Mac OS/X systems. It is
tested on a variety of UNIX and UNIX-like operating systems. It is
written in ANSI C99 conforming to POSIX standards. It is meant to be
portable to any POSIX-compliant system with an ANSI C99 compiler,
including all UNIX and Macintosh systems. A binary version is also
available for Windows systems with Cygwin installed (Cygwin is
optional POSIX compatibility software).
-------------------------------------------------------------
Starting from a Subversion (SVN) working copy:
If you have checked HMMER out from its Subversion repository, there's
some additional stuff you need to do one-time-only in your new working
directory:
ln -s easel/aclocal.m4 aclocal.m4
autoconf
(cd easel; autoconf)
-------------------------------------------------------------
The HMMER development team
HHMI Janelia Farm Research Campus
http://hmmer.org/