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Using only the first word as the chromosome key #1

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pauline-ng opened this issue Oct 6, 2021 · 0 comments
Open

Using only the first word as the chromosome key #1

pauline-ng opened this issue Oct 6, 2021 · 0 comments

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@pauline-ng
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Hi @jamescasbon ,

My human genome hs37d5 has headers like:

>1 dna:chromosome chromosome:GRCh37:1:1:249250621:1
>2 dna:chromosome chromosome:GRCh37:2:1:243199373

In the examples above, the chromosomes are 1 and 2, but Genome stores the full string. Is there a way to just store "1" or "2"?

For example, pyfasta has the option to specify the first word in the header.

Thank you.
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