From 719c1d6cac973df0348fca4c96e6b468eaca4683 Mon Sep 17 00:00:00 2001 From: coltonlloyd Date: Tue, 21 Nov 2017 17:12:17 -0800 Subject: [PATCH] Clean up repository --- .gitignore | 3 +++ BOFdat.egg-info/PKG-INFO | 10 ---------- BOFdat.egg-info/SOURCES.txt | 14 -------------- BOFdat.egg-info/dependency_links.txt | 1 - BOFdat.egg-info/requires.txt | 2 -- BOFdat.egg-info/top_level.txt | 1 - BOFdat/__init__.pyc | Bin 448 -> 0 bytes BOFdat/dna.pyc | Bin 4175 -> 0 bytes BOFdat/lipid.pyc | Bin 8584 -> 0 bytes BOFdat/maintenance.pyc | Bin 6301 -> 0 bytes BOFdat/metabolite.pyc | Bin 10799 -> 0 bytes BOFdat/protein.pyc | Bin 7657 -> 0 bytes BOFdat/rna.pyc | Bin 9068 -> 0 bytes BOFdat/update.pyc | Bin 1979 -> 0 bytes 14 files changed, 3 insertions(+), 28 deletions(-) delete mode 100644 BOFdat.egg-info/PKG-INFO delete mode 100644 BOFdat.egg-info/SOURCES.txt delete mode 100644 BOFdat.egg-info/dependency_links.txt delete mode 100644 BOFdat.egg-info/requires.txt delete mode 100644 BOFdat.egg-info/top_level.txt delete mode 100644 BOFdat/__init__.pyc delete mode 100644 BOFdat/dna.pyc delete mode 100644 BOFdat/lipid.pyc delete mode 100644 BOFdat/maintenance.pyc delete mode 100644 BOFdat/metabolite.pyc delete mode 100644 BOFdat/protein.pyc delete mode 100644 BOFdat/rna.pyc delete mode 100644 BOFdat/update.pyc diff --git a/.gitignore b/.gitignore index 0d20b64..166fbe0 100644 --- a/.gitignore +++ b/.gitignore @@ -1 +1,4 @@ *.pyc +*.egg-info +gurobi.log +*.swp diff --git a/BOFdat.egg-info/PKG-INFO b/BOFdat.egg-info/PKG-INFO deleted file mode 100644 index a9202fb..0000000 --- a/BOFdat.egg-info/PKG-INFO +++ /dev/null @@ -1,10 +0,0 @@ -Metadata-Version: 1.0 -Name: BOFdat -Version: 0.3 -Summary: Package to generate biomass objective function stoichiometric coefficients from experimental data -Home-page: https://github.com/jclachance/BOFdat/ -Author: Jean-Christophe Lachance -Author-email: jelachance@eng.ucsd.edu -License: MIT -Description: UNKNOWN -Platform: UNKNOWN diff --git a/BOFdat.egg-info/SOURCES.txt b/BOFdat.egg-info/SOURCES.txt deleted file mode 100644 index cc6d080..0000000 --- a/BOFdat.egg-info/SOURCES.txt +++ /dev/null @@ -1,14 +0,0 @@ -setup.py -BOFdat/__init__.py -BOFdat/dna.py -BOFdat/lipid.py -BOFdat/maintenance.py -BOFdat/metabolite.py -BOFdat/protein.py -BOFdat/rna.py -BOFdat/update.py -BOFdat.egg-info/PKG-INFO -BOFdat.egg-info/SOURCES.txt -BOFdat.egg-info/dependency_links.txt -BOFdat.egg-info/requires.txt -BOFdat.egg-info/top_level.txt \ No newline at end of file diff --git a/BOFdat.egg-info/dependency_links.txt b/BOFdat.egg-info/dependency_links.txt deleted file mode 100644 index 8b13789..0000000 --- a/BOFdat.egg-info/dependency_links.txt +++ /dev/null @@ -1 +0,0 @@ - diff --git a/BOFdat.egg-info/requires.txt b/BOFdat.egg-info/requires.txt deleted file mode 100644 index 01dd35e..0000000 --- a/BOFdat.egg-info/requires.txt +++ /dev/null @@ -1,2 +0,0 @@ -cobra -BioPython diff --git a/BOFdat.egg-info/top_level.txt b/BOFdat.egg-info/top_level.txt deleted file mode 100644 index cee1f4a..0000000 --- a/BOFdat.egg-info/top_level.txt +++ /dev/null @@ -1 +0,0 @@ -BOFdat diff --git a/BOFdat/__init__.pyc b/BOFdat/__init__.pyc deleted file mode 100644 index 3e875f73ee4f4417deb68e32aa73d2bc9c8f64e6..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 448 zcmYk&%}&H15CGtzzw53hK1MIv7cj=?Mo((O#tRpMElDvgH0|`@&G+)Ld;lH5W*5rP zZ%CL4>CeUX`)el}_#X-FceG}t(9*}C2N)O#2FyDNPCz8lX>bZ6jn0BI5Lt8{oP)@t zi{Ju85nTqCAWHHE4%HbIHor6~Mt@jPSjJYNj!u1FRvj^|DCuOJ9BO0ZX-wNfRkTjR{6wrf zH|Y99D|^*+lbO+tov!z;Sq5!!uAh}bN^AM{aM;(e)VfJ&tU)QS$4~U#+zhT=dVTAg Ln9nI(vg7;%f@V{^ diff --git a/BOFdat/dna.pyc b/BOFdat/dna.pyc deleted file mode 100644 index 6c4a0be3c9cf4d673b6607159e6a119e26e22774..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 4175 zcmb_fTW=fJ5uRO=y3nMgC|2UO3A#>mp^;QVfxtzCxUnobvVlYvRty{%NEXZ8LvoqD z(0dMLxgh)E{Ez;GzVx+y&acRGUyJ;J^qV=PNeVXlB7!@6&Yb&v^Uay9{L-x7Jbv>@ zMAKgt@4I+(2oV!KfpjQ#DXvglrCybupjx9J(FEm+6wtIPg(}5sQm9e9E`=3}>l9z3 zxIsU<^kkLdrs&rw-k`JACNG6GsD5;EP``8MPQBjlC)&%3c$6xyr*c(>MrrTfqc3&j zb&Jw7edT@XbwUko(e*ISYsClc(@(s(E%LB^>VfeQ0KM*T9;rWp3s-cb>a zGL;*>_jQ;Us8#UI;n~q1Y!ruP_KNdxclg|FV45JwhDB)tyG9cl%}bKAB zN9>?bz=;Q9jTeIcZ(s{{0-_Xlfe}!x&<`$^ciA8?(V)U((0fv${HAoMN{4XPp}Nok z3shi6Ho=L&u`9+D3k`IUi`_1=RCopWxjlg<%Iui!cs&Q~Q$$islxD98= z!Q%=lY#v5NP+^uNAeaDgn_m@@SJl31bQ>UD{E4l6^xdr~N&pe~SXf|k5ccf}fWY73 zhR>hgqQ@wnwN^3xNdiH>2zG0qjqI}vCtS6z&efhWf{ee0in#{Ce4P51;i*)r*hR&Z z=V3ZhW*ypGJqx6E^@hEU>9GM5JC*`k>jqj|B% zMgJZ2wXVbgh$G-A4TEPY>Gh3_4u?aP#}bv}Br@W0e@%uh2FYi}`M-ydJsjTu>Z{=K z{fEa7+Cp{Q%YlE;#*N6>b8XtV&DDpe4<4PJJ~(LKpQ+hvC5Rw4camPuup%l{x0^%> zUv~ZnQ1~8;KR`&k`0Z@N%oDMMte6$)tbq@gp{|1=0z;(IRBnQ~s(19*Y@rkHa&gJ4 z=K-@6OXTO^BHuy_tNj^G+Jhjs?yk7+I`2BoiVaws2wWSWNYnYPyW=D`5R7}@e)i9w z&j0=QFCr!jhhaYcAs+oD1fmqEz&<4*3Es@*8sXZ6_i`1v%nFAPfNP`G%joo?N}ve5 z@=OB0{tUsgUia`jewmJi9{WR5lDIDi|)*U@S7r_m}o|?)16o7r7@1-z!&^oBi_2 zqMR=<8gfpiVlOO}$JvXV7&*_|*2O&)#%%9Y>{3Qe>gli|o=@&t*Qq z>;q+KsYhtADaUpL$=oKcw{=HSjtW}%IpiK}ilxsD7uSX4(x5JL5_RNw_G3e@g7g-Q zZ-$8P`1oPJot_j-nx+}M2QfA;C_q5uE@ diff --git a/BOFdat/lipid.pyc b/BOFdat/lipid.pyc deleted file mode 100644 index 035adc4f44e0e9ac4f7bc331d4aaefe9907cf476..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 8584 zcmd5?&6C_l6>n+wYsR}?$6hCKK9v*+OX92vm6(((m;`TPyW(spt%D(CGo_Ij^GFE=^B8j9AfXcz^pZ}4BMb-N#FXOIS?ICOep5@uc=YUf+;y{&zx zn`Tbl51p7VIDVSsVUjy(S1SE5j#pYO-@=d-(8hHQm)=AH@gQfc)V`(0N^Odq2PiFd zVc%9`5qHa0*&AwXsZCpLHrNk6_8TgBUOG%EcJRs$Q?(9QHW-#4a^k4kT zDauMtVKy~{ZQy2i5bLM$`)(S9F&8xOawp##hE9^^jvft%X_kk<@-+J7Ec~>CE#RFV z#!;SgSy7rV;wMhMpv{rn*sm~_x-3MU?hIm6x6H}&1r$Rs@3-^RRJ#-<=Lv+n*h3vb zI!+8JZ=J(+o|ips`CQ;>T(h_+re4D~^89Q$KU-m2 zaYp87dP-r_abBw%i)tT7GR2eo$X0isRiB~_2U(rdG&eM#QG92bf19&Z(hC<>H|Ev; zj2h3#iys~CFmeWuK{WQ|A0k?VsX#j8Ac32({Hv*?9|=Lt#&0b&zmgjpwDevL3#EBS8aJ z*HRJGcTR2MO>EPwy3B`pd6-j|gC^@>Z#{}^?JubD0(4Y%-^0GPS`PkQ8G4yFa7q<{ zVQq&Qm7?8^;_!;&IYH#-c=obAnjKp6DCs%fEFFmLCEg%(hFPd-k5Mu)(sU5{4iv(3 z^3?fObp5&$1?UrXBTTU3h_TnkhUu3!A7GFy9rgOoz)MD6?D!+t0c4oWD%u){8La*u ztB_X8&Si0WB8OC7EbXo`H^<9DhnD1cN#MXnixIOhA7#lEXEekb!a!Ei#a4yRPJ}@R zVeWNOSS1jun~v~mv38k8gc2ZFi=f9UA{_WE8n|ef=Wyv4QJ@`Yv+;~53A9HLiApk~ zGAJeymL$CAf{B$t9 z`V~BBnr>6+J^bA6Lm3QEYiB3K_7dNYZ<5m)<)*!+K6~jXGw)XVbCG(dp*)%61p$>0 z#|h<29qC*g_H)|FDVN|*n_8LARgY1S&*H&P&w;)jVBr} zTW76?^@RPZ9X$$(dVl=YzkmO?cmDiMbMyDRZ}>ddC0zWyhD-km1;_zpu>`0$-pW3Z zQM?tPH8A&Mcn5&XDYwoAMFKhyc6^!~v44hG zKRzR5@epx*j1Fh$eH`GGX?4(0`)7&jW0dFsQ-|BJs1Byp{y8;12WzLs>TQ69L8R-I zM|232;Q~#x_KKf|-EQPZq-R3i1deG$$9yJ7{4ecn6Ws;UJx32iyifD;V7Gl@EFl(F zeZ($-`sp^z5{8GiER2EC+o9uifQDY;hxE=u&+nVp%5iu4;1zkJuC0z2$LS76N=uTd zvxU>cz)6X)V&N4!@Rg(NA}hy4eqThVc#}N>^+iW?Z3o_@6NFuF6d&G+TQ|Rb zbG7ZhdHd#jwc%s~9dQoovB2jI=2n6gx`31N9N)`2a0C3l7bW)?Va2&=qK(NrR1YHp zl!+u~6enZ9VO!F6|;)FLRu$~t`m#st{jS{5H3kf z1tm_zO2yI3X0Pw<5sFjuua8nbW#-kz7)QJmwGK zt|ZFJa9jpdhM#bAg4FaVMjLorVVf>a9C=CJt|pbupcBUc<|Mbtr7I;ntb!u-gj_e9CTyw#yX~@J>PW-Sihyo? zneLMQCtM1l48wRZ$I>XO-~^Ud4~byI$Jj?KPaNORk7)2d5dj98RTE2qf!Zj$2dkDu zR1145#Uw@KJETzhxeh#5hfy46AQXWAfo$4Iv#1v(2&)WqiCGH%9H($?*r+zw7h@zd zW)TrhxD9jOFCeTL_GvZPb z*b8PBzI@gTCD_2u`Ce`SfkXGN1rRMoeH?Gsi_t`Vg%WqpDN$_EXj~*5me} zLnM^xizw*5OGfZOj`CAgW_2vd>Yxd!6O+|h7ZO^Nakx_IiHt+Yj%1vTrzbId6&HM> z)cK4uON&C>>b_q%CYRVz!5yG+0T0W0r4j284b+-HiMG@jP z2>ST5K^!26-QO{6Tiy7zB>a#p#G%cQJS?LFWFC1&Y`C{1Nka5M8m}Rp?%aJ+S(XJ? zhjmj-{vj0yw}+3@lCJrKP#PY=J5t%T*@x*yj3hn5a3+Ij-Te!xuRazg_%5zHhRGPQ zB21KYW06_*i9lQ}S1qgkIc~5*B#l@$)b34DXsGPQ)gmW~&0t3HH6d4cYg4kCyASh@ zZOCim9%Ktbmei_+HvHYeX2G=4f-PFY{$b^$Wf91vOtEim(R?Oar`03aIIL$~6lhJ- z5-#ij+QZWkTwv0BggB8dr8gXgN#N3yO`bfB5=lN3o!Z6+Ugm<`=h;i{3fEoo9c9lL zscFe~7{|JucH6GZ7serDDwD)11~eVR9i|*a7?U}nnH4i)u9HrJ)15K%AT=i>@)Btc`e~?(P~-?mcER(TIAaI7-p35({sq8eg{!wcaN+XF_-}37OQgK z=HM)l7%S=+^5ThfS&}iV)eVPfCk*gH*{wZ!s3`1UM zM(u7D_I*GT-w?i;c4xD#R?07yAN?EJ5Wo2 z7`^^J`@F>B5{oxkyv2ecnG0Z6`8gC-a4?BvWsii&tKimb>MCF2e&SdrjO%`n)fBEs zg&kVmgV;+Nd>J|&n(S3H=%-Mq$6Jl&RCBty)SPL)*gQLL%{S)lMWl)!#eYJSBuQS^ zaA_JmECC!A15xEOi&aFMU@-8Wtt@c)x_mU%bMR zi0>H_w65o3YY}6a(=p%OXb7aM`j}U0y_qAL3|V6LWd1|h!s1Ja{7kYvMVB(Fx(!jw zl^oCgkRpmNUWK3%HW~kqtZf?CgyV(A%~xNyi#E|K(*b_CWKB&!>dw7ZYP628J_s#( zyb`yR=Fm3(70t$xoIhi&O?;GgJ4pR@TRsZ8l*uwvz6`tLtWRa#U*>Y?tX`OAIqDpGZsDA{7FHO_Pc2LAluu5zojk{g$4yBd% zLhURqDkXscE*cjF3iN0D0)2(Pj^Cg~A0Yj{GbBYtcGChjB@SoL+|KPg=gfNlUTk&0 zI{A65#vd2Izrfd=Lz5`=xl-CuiKBk+sLx%MxN2+N`*+{=Q{yMPn-&<1j9>3)Ul+RCKJeqx)PC9Zw`G${ zei7w5JMepDc982T{W7Z4vfzX~imNg&GadIcZ8lo>%Hr~OoP1A?u5_=`Mi;doWtlyC zP*;(hOje>=h_S|K-X}MYbrqMn_UqCwd%A*18?8@wAVM#SA4S_5>~wX7wfmev294h> zE7_)Rbak!u)64z`Q3g)2)(01UR3tvx@w*Vh*8^;u=HMyH{3NQQ*44}YEmNoY^XEff zWtGO5{5Z<`+O%3R?Q#;|2EJmWzo0|YDK+wFI(8Z=@!0tzC=KbrymQildFQ30)YtfT z)Yq>1+EZODIidc5wR0+2;Dph<8hUEzs3(pZolwJu8Y<~8sNtL%f`X2#o_K21R6|T| z%4kasTX3HyxH3y%u+{SMu?D;RU9Lj^c>mK+rp|%+I`3p@vHdMK@Y6!HURK*tk(zu% zP7zym`$a6i1GQO07_o#HpjVZT(*(}gi{QDi^D&ET__7O)gG1u1pJ+37QlB1S{IZb4 zl9bLs_ll#c179^|zlycFB#g~S+V9oTBQ1-?TXYof99<(`LfMUuD=o~AkAnN_I_i{J z8q1;kkpT-E{@t?DU=Pj*&k>+leOLmuv%iz#7)Ur4S-3hTE%6yWj?ygZWN`1ozmwJ< z_B$KaYS(&E73HF;*!$N^sY_~9oXeK1A#SbiemsC+ZZ zfBu1andr=(II$OZ7xE>4*Dyd-zUkx{6$?!m-}HOEvO+96B7xZ{_d}rYn%^nQ?2^Bq z0`pT7!QHYFu-;GM6Gx3XHke6uWzm68Y**v$VXb~uT=OH0iq}Qef&V+6B!Imn z*th+W7%)ae72GlgZxJNFMg#mNN@W0@LzL~}5y+B|yf$(PGvN7=tE%e+y6 zgrBU8l8~!H(Z0|s4H~s?X_7MPMNFo#=rA%h;4wAhfgT`@7ob9+F%V2M{EEkizQ%#t#wYb8kBB5kLMoT8CYCESJV)j$99m1 zP2?wFM2WrR)rrhxFcz8T@gPGJQ{t(lw1Ifr>*#DNaWbVgAGXEg9Q7Ml?J;cAL+(i{ zQf^5|vx0F?5r}i*S0~RIa;WRj0x_IKRZtBLp`4gMbW++ugv!x5G@szbLI}#Y3G9h0 z*-=mfxZD{0Oijl&AHKtk$z<11YlNRn+XV?e01|+QHCuc^mY!k*5eHwLzAj*Q`fVpIbEKBA?Cfet@K}eFisU+GjG?)F2+gV1$Qr#5 zT9OpNTp)RYf&VQk6qEvU4r3BljMcG#9!t_Z{Zfl(bVUs)mbIuM_#q}pxPqpju~!*{ z$xBrCU^!F2hrS^}IZFsgO-BmY*YM1Yu!67o1YU56USQ7~CqTw2$#$C$*94(>5Rk%o zfW|cjtv3lxl(r~pQNN;cO`2+Z4jOb($i8@k)^vm4vYN#PH=bf^TkN8ig~tD`o{9lb z+A?}T^`MIlo+7H)QWz(mWGNhi2iw73ZL#9K+67&B02}rnMfMjBHCkZBJZh=YNi}%e zn}~S9V-Wh5h$Cz^C0V9Ni!-D}kz;gfhIGo3mS#vxmb9z}DSaSWW@mJ*Cdit{*O|)o<@H-eB;j7fH2uT&nx- zf062#yvbR0-pUN7A@hn_oyu`c?)&cEefI(GLC+Uw)r#|faoZ605T`#pZeoM~f!p&h z=C##CAed?x^~?PuKi=X+8(-3dZd zC$itxXMwE4FKH>OmXtwXl9|*rKQbxP-#TmOfILaLyoqY=Htt_Kc$;)qZo+U@?&~V- zl>H*9Ddu6KnMswh!z70q$psMNuGA-0RBY>jHE-|^H)SN2%ykf^iLf8_db&tNiIO;M zJ;E?Pxk&{qPJ-`qITchza=!}Rm=MNUP&9yCAd{FACK{FgSflJyquf6p7knbAeK%xH z!%N7_vn-(Wrr$AmtAi57-ZSlN3isR*Sx05>N_myz(h=&x_|`2Y8f-K}q4VGpin^M$ zO0dp`nLfD4hWU#m^|J3V^n~gAi*P&2Z}AXRQ!MMftIn!>*=;-X&KY-pj#;(2u;g8E zmfaP1#aZ#t&b{d_JFhzz=bN7It;{dFKX5GNg7af{#ao9m z!=J6}=pB?@D(wbTcbKc?f|{UYLs~?QEX7JDms7loLV!R4xW=T09?Cr=WaL$r)%XWg z8+>>41ybug-!CBrBhv!ih?2;YcRqa4dd!pcNL$G%?23Gbz#xf#1(6X8Q9ocCd;Iup zOm;{=!P-iCSb#%YYFjSaLTU=>(_zAkfB{TwJ zDZX-PI~L&{$FJTL%y0kgul)S$y%g_Um7oJJ3v8)|j+AP$$_50+g5W%7(hrM%jw>z; zU%cw*Wo4bE9b9_Zvv*S4B_8=2wTm0PK&q_pT2prggC<5zuPZr`SeDKpOLOTQu*0L` ztTb9);srPHD2y5eOvbIECy%|X7AXhP9t3wW6x`!vavkGPjW;E)ywH?@1c3YlhZ+{S z3czSPOLSuI4fnK1S3Za0a}^YVqjgIVyDqwwh)X2}H`uh;(6qrvY$7(?Q{tc11fhWA zjNRl#LE&Y`177%MU*3f??>#7kVRld}&4p&8={4JE=T}X$({|hL8MocIXYWk(j4({f qI1I(gx1-GHAO_V+!#$+;ve~DGZ{QM!H~2rN-VKxByxaapUHlJ{mBp$6 diff --git a/BOFdat/metabolite.pyc b/BOFdat/metabolite.pyc deleted file mode 100644 index 780002535a1da81ec364a735ee67c5f2f686ee06..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 10799 zcmcgy-)|h(b-uGpF1agG)DOy*EZLeSPPD42C8fq{z&cL!+iEP@7}8 z5b3!3w5mQHQ$bCN##Jz(mYb98;5m}UvoQ14l1`L`jc=9z8jY2WNZZ{c=yyW99mZkm zWudn3fACoQ_Ii@q*+yu0%ci!U#90_;cCs!de%R@>8V$dK5vK8-z_*I8zHSw>J*cRC zd@S|SQU_JlR%*YhHkEq#d`2CNsr@mvX{k>tYWuqS5!%R-Iu&&=uJ*^(W>xJgX<1X* zn99bbeNFAx)MkwTrp9h^~FUG1M?mzd60Ri#%g>^zrw z25ZFJrquqF)UH|>?v*F+#VD&6XS0TlYBX&8TkLtM*R^|Iw&7-pi=EyHQynF-yB>AI zMccE3$j|WXrF%RFlx9)fw%607D~Az#-O%o(q2>WavApXr~nllS5Mx9xGy(r7;Y*0U;N8Bl@^2<17fWi)dg$S z*YWomH>TK^Y_AvEaWb?)&2iL$4k+a(Yd8nybPp<>aamE4&EQWb@dB4UyRv+Fmxg$! z*Sa0^uF1hO>T4lvQq|#9Ak9jJyHIk9o(v&{O}ti;=%>idZzSDtelzsqTmD8G=`87O zg!2y*zu$#q>G@|~l;L&ge)M4Z;XKRSjqzSvfbcwIJuSCFxF+<78)%$R4;db2kc3VIOn@qr5}W_LFY!-J5vQoKRiqKf|Au z4XE{qq`wHEEfkNVB5$wtGh51stifK=Pm2ypgD^)!qG1hE+Y16(6X++bNn)Gol*dK; zYuavddf6EygVWPS?1GHK-Gk10I-5jRq|MhmBI8_<$oLPVUPgHElTN=IYmqa6QHpO@ zOVzD#PfOKK7&j@M*{jm=vG&m6NDe3D$kcdJU71iX$mC7pu0`#(8?4J&Mj~jitL7zV zC9B~I&AB=wU?Z@Cv$wsmGqUFpWkV%nZ05{TdS0s83B* zu2-h48S94iyOnE|x2y|R)w*60ZJ?xbk00Qxw=hpb7--&rzp!&KSO#E`2ebl+#qz=C z0gADE*nT3Hfn{)s5?}?533-o3E0h3RR#-0pw#J%3=G~>C4o&?(PzRGVWI$aE4f&xB z{V^Yb#x|6c+WISEIzZV}vbKMvwtvjeY7Vax23~=_b%ED^C$?fpd@6uzAoK16AqqK& zzbz&KfIO}C@tKf8&RBqQ4l>1=Sio#POv}Ue84I6P?owSvupA8)Osc!66V%n+K%S6m z6Em#kCdEnr5}PiF^H>g2=OC#SwW87Q1IZ(&Q=;sys;6JwHoQP3-#l`y z>kb}Tx9_wT7VaENPfBC3ILb9-R38T_;6i{A((r3!2Bbld#*hZ^1n3IH0IEi*uc+Od z)Hx6U5Y*RmWkZ$gR67s}NK@4a*&VgI`>xcjvF;t#g&LY-*hQ+wCwx4%^(Sikld^+} z6Fd0)#11}J+n=jdOv(5PhNEa33%&pJgJ<`am)(AGV4$SH>6rN5qIstU)>~08O^lpZ=>0Ut0eUf*DtL#+ z``dSg?>HAw=&*+1jMwXhaUgg>f+TpMvs5UJbB(n)L@8u2_aeu_b|7}If!K$1@QE(d#qLkh>KS?8^Wb-r>Q_Pk-u7JrYhp6GwTA@$GD>;y_M zN(YQ`mUu6EUrxl9iO`qJcWLOnegiWgjV~G{Ynve)6WFQsek>k}PzFI^u~jZT6A>5l z7zGZoPB_KjcpWl7=Moc^I$vjUgUQ#JkP8TDpf!06Pbq8??i|9R^A;0wCJ_OLa_Dex z9kObnz~!QIu)oUEuP~Woa*GKGfWuBtO&l(x^C5`OchF4f_fV#}XmzGOTQ4ELW?hCz zoU>lFs+B91Y3mBaWf}s~zB2Z`v$y``C*O`P19Nkt+P*ar(mmP(U#&0PQ9uGez{{8v)PU%{fbWCbWjQItU1=jjMxMwLc5fROgER z1AJHvvpB4UtPPx1ZI8If5No(4k-q^85W*SpA>HBndgMp6VDz#CocjsA$|9hVpNI@| zRIZKJ8xCU|8hZwSp^pVL5A-ebwg}yrS`1|CftSO(7LQjOFkge#2vxviUy}?Z(5!+AYc(cwVXu##grBUOFAY$c3xMBI+WL($Kq!}%}D?i6mjXT#!iB-yFMF$CGn zysc0dI`C;o+5oHIt-->2u^;N=$23j`ElM#O^F?<#%i#eo)`8~~wKs}Eir~Xx z(JH1#qQ=#Z$d)iSA4iVU?dJz=q8BoglMSblB%dAzm6#5o5RVoz1L7fce!$!dQV${u z?QLc_2-z3m960xfBB7|_!zxf6|p}cJDP}zr!O2Tac z5ut^GT@zz>WUmEHniH7Lp)DT5niA|JG-ObW^u-|z80;cg2+JATc&W_F!BUW(=>9!7Tkw-rcpI5mf=;&3whO(fzFAqJZ4Af_R4z%`V zstPWv;ED=fQ^8dgTvP2yIxi7WzN&V=Em2X#Ga0SFE$;J}1m+?97Tst4kD>_1U;hWS zt*I1-bi9KHy3Wf@lCdSj-8-J^zAssSPZwEF_lj)0(=W0JCo;=pYIpXe4Q?umQs7XL z?F@SAgk^JBj-rC6<01>eD6;KN`4)~y@m3@DlFtxoS8U$;WFIzTi~&b&!%BF*$EM*5@#>eKfyaqAW_y;aMqetx8A7Kz*jGWxt^`~ zTrBm98%C3({}l-=Ej|@U8_e!*Ff4H26M+K<#MO^MJRlqHeZ+4D$E0tJ>y{^K`!&kk zCL~XS^uu*5*l8BXbrITFsJn_VB%Bc=ruk(MVm=6d)y3KVd&Y*A`P`7_f9AChUZMFi z6mPjH*5=m?^axGlt;Yx>EpJbb64E2YNtl9!YJc;UOU`3JDAICZ3ATXUMCoySE5DN& zx|b;-op&o}tEg(kH&ZZw{=+24cZfLCGVC%`(SEkSW z#^wmMX1we0rVX}z@mO}oJ4(!+MEP)2p=u{?SGlW863i2il_6>dIK&+_3L9ny$8SJ> zjcsF)N)MOrxrmLpFjJXB^mpE7LPu6c z#yoOgws09l-;McLMJ>UoFF7hrM>)T39Oh%ZqNI)bClnj4pQdm62E9~kRxWMEz|?#y z3o(>hFZlI2GFcHiducAqDu?XArq}_HD+13C26kX~UUZzC?alnsche|1xR|BV`w}t+ zMop^i`}|1o7Hm!8%wi1ifKNqT5^FGboHbaM4P6qaQ}$i=yXGVqgK%j39EoE|SU&U8 zOj8YwD3nql%^fb;Tu_)h2{;*UFZ8yCj<<|DI1-a!B;vHVMn?181~eAx>y`-f1xhqS zZK`s?n#LKPlc>WquHNJfIejuEIm2HdQ&?{J@}LSo9k$$mGoT8)Z8AcWs(t|x~=NOW17Hy6uVY;0=5pyF!w zxPnBFyzL=|oi!8P!g=^Fg67SeBgMwDnciAa(mHgl+q^ND4UL@pL(gyV*7wHEfqDF@ zJ*Z@u@wZM~OF6j2exKz*eFR2u`8RUQC>c{xdA}OVNLVj2Q=2&hU>gPjfJ0+(JGM3>lXs z*kw*oFejs_IBG@Yl2u|cd0<7_4Fy`n79MxX`SmRAqZ!6ryMtY77|hgVWJZGc-SSoY z;p(XwO3DGQw|I+@F(Oe04*wekxu-@sxCmz3KveeiikS-AWrXx1hB6ewFi!p?YmmO1 zZF26dJpI7g!n5<7$tII;FuBWw6`em}5-@=SRAT1^sA-OUrNzqbCdOv z^)C+9X83Z@<U2hcE89p;>ukFRg#@K)%A48fb8gxZ+Pg~q0qyg=XV$w$a8W5lU3=g2{rNuc z$9cE%@3C6`=fig!s{BkLy@ap+14yLQT~J3wu1Xzs*HuwPMFT1tR8dt$Ln<0p(TIv_ zDmtK|Q5B7;=%9+mRWzZZLn@k7(P0%$sc2e7M^tl4-No>u>KjapNsdVdQ_V;Q6CRfg zrad7UO#Xsou*8d!!9p)d2FtyyB2Psp)i`B*vuC`pm1MaWHj+qtjXX19lEsmi zWM11&s882w$$#)!G!E9eEObujywIycuL->_^oGy{p&tmnDfE_5JI@`-e<;)!x+HX2 z=*L1=gnruKy4CVKhg6TDreu~XEB?g`` z9Ijb?+L}$SIe+gnwL2&q7<|?S9`E14UT&fS_S{8*( zb>5a41X+r=7H*p%Obuzt-XMw00TfLUW;zW`l4rOyrRp3f1Fj^w zPhl|wAVnNThKsGmq3IN{mRhsjj%CuVPM9WZNnB{zK|3sTTqow(FGayxd` zF*KkeZ^c0oH}b+xuj8#CN*YEGkQh#3TkFUvA^I9}v+Ec*yAg-kn~n7%(I#)N$FuW! zqtl8rqi1i0i9vN7d^EQ-KMU|jq3I^&4V-Ron`umiZJD5ZD_Fl1XN~w68uUvb%AIg3 z?xa(7CY+a?AG$U_CZ$d4|iueMTKSLb|&Tmg z&}mfYQ4r;fI*0L{z*iVR$Py{SfZrmsj{y)=VFUE0Rqjn>M87|BT+0qo=%823dh#8PKXkom3&+lT!WP7fXQK8F7UqS;w*Yk!K)sm&tPgZTdDpi_{loi`HLgUAb4J6RM0>8HFRZsqrrtVzqzs`G|L?%E+b zXjxOB(a`s$KG9hxO(lCjOgq?X1w+DYTdJZWZ)c(Z7H46-Hidtd1>$fGxHEDbk#V+v zm9(wOIfOzNX(Ekz3wnTO81_ z62uTVDKv4AuZarxFSCgkU?%&T@R@vim3!SeZP}UA5kRck zYuBQyq`Dm!qR^iY8n`R58DSVSawsUB(0X1%wLSu(hO5quQ+3B+Gsc}m?zB7R9&#H* zGOuV46`w(X6S$6I9nLYSC`krvGH8>kO@?eTY?Be2)NFFVCZjePv&li5jN4?wCWmY? zX_Lb?nX<_=(BdisCFc+-^q=695U0Nr=Ly=;Q4mOoHBl&<68+%!&LH84LA52hXLYv|rA~LKlZjCrATfYXv=^`J+WiLXm?8j%~Q)l|*gkK?{XXBG0KFx6Hv4Q)KN|B7$)*b^6jd!^);F=ObLR$$;O zPOUQOj5#xI4JLom`dhq7vX81ozYRisLASn6@Xp_RndTa}C4|Jn0?G8|9e~AATVtgH zBno=)s0%2_3;#oqx*%f-IkA7-d7wKjxlaERcEI<$cSptNp*z}L5C>A4I8<&G*D&rJ zbQ|0ntC-3a{0*7^H$?&m2UqSwWbq2RU>Wlxv1gVs&;Vc>>>2(YH4WLP!5Tz=E9~MR zUEKN=m^A=dre5ta>-&)9CjlYKfPnBn2N7Fy$G^RNbzw2^FE8W0Mai4Hdh=$ma&_VQ zjb(9J;C?5$ea}#FbO+cTJur!YN?(zDyvFZClp*+1_k5tn^N1CbHFit=->nInTr8pkcL4X<8Zdml?6mZVA#rnJiogIIN>mIWecJs zFm+`CMgRt{EFek(vsV@nDS`1T3y7A$1eOIvOkfDh0^%hwhh+gV6Bxy^fbb1WV_85T z2L`e%Afy8`Sr!o7fw3$L2=l;XmIVZSU^vSH>^ID3SwIkoMs$$g9R6JxJz6-U%n|6N zlok#U-#A*DHVgHQV-%HRG;I)#y*6vsYHAwRaB6o{?cm>qpo~#uHfGe$7$wM|dx%2c ztgPKSaL+Jq-uP?dpOv$hz7Jta{s9QpUjT&sSrCzxR&2u6 z9Pd&%f;5?78V145pdp3Ew(b=|-R>2dX{T4fo8J~_;hO1oIT``5UY{f_`*4x8f8I3i zn+n_MjR|$uE5I%76`E;ZOIS2}EgDYe-u}&cUjcTtuchcajM=u`#0e0?W2h$(rE7I? z9S`E9xo-R$sOs~$#ryb@b#IacAmRtCTwcEFceM{M#6Imgq4k>?f>}+PO+W4q5!WGU zBn+AKTm|8b=&x3umYWb2)ht3h5IA8AEjpl|-H7oPq}}ROHRo3hd40zQ60v69!pjrR zG8~n1wdbSM=<;D1QJ*|*--_R&NuLE#aLY%lFFMDe;f_B+C*Z2n%8I3Rr~{9?(@t^> z>aO|AU-0wy_Zz%gDto44e+y)w0iX~!2UG!#;39UAfh(xCZmxZx**6?w0B}zrmXJxj z{)WV#miHVTVAwraMCb`IppORV{NnEE|H7R?v;mJoXo?!dm|9u?34Tkh=HYXFFVq`) zdI7g?5!1fOG3wa(G0Uhw_exXWv?K_=!F@g3=&ybgT$Tk z3`(h2Lcp^~_5hd$uogCB^p9-Jf-iarRv_NYbDT%;Fl>3GiymM&4?SSa%C^C#&fEATjG6!kl-u%{nHKxam_jA(Hgu z7NoMbK&Q=66(cJ}>@l<^M?^sGsWZx3mq+KU=0T2arJWXn?-F#8`&h#@#9m!`CK=+j zr+Pt~H}*~1=XRX;;)l59gi+8iO}D}PP~*KFc@)$x9}pv2i(4iafyNOSmf1IB*HaPK z=Db{~_zAq<`Nhi&GVz+RNP^RH>T-AyBRZV%P|w1kmV4<3qOiSusQv4G{RVJ-tD_BP zj|)%MJ>|*c1pG4(;yClpoR(SMIxP_l|5Xg}?~pM3>hpIIKO*@FNS(s!zf2+ulP@gM zn*JBeog|T`*PeIhe~CIncj)_5U5rFC-iPDH{d!CP9u0aDL`{u4!-zGFI^zSQh&SOi z#77I&0KaqiYF-5N5HwI~e;{$;A|Q$>4zJr}Qy>zchEFHT`p*@9Vu^O+5u7{i>mqMoFj-I#EI6$5BHbWNM>N5DMo zpgydClA+JX>Yc#!`}eaCKz~8Art7W_OgME~ZwW33L6kRwz<(PR{`(~I`V~>4ljhHp zJWHtjpR)DmAiXn5?z{YTW*F071e@_o=6gfPYyK(&>+M__A2~8IJW?B(896aBGBP>x I>iBE_1r-C&g8%>k diff --git a/BOFdat/rna.pyc b/BOFdat/rna.pyc deleted file mode 100644 index c28f9e88cb098ea04050816008b5e1732434f8ab..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 9068 zcmcIqNpBp-6|U~#HbYXRBvOmlwk_GTLsQuxCyHc?BDDoJr8KE9P^`3@(>24Udb)?* zJrWs^wh`LMA8PrDk?Z6nNbx?NM=k0lad)%!C}c9 zQo#|)OsL?f3Z_&rt%76ncU-+UsBTZH;DmHI%vCMVoaFMqj-=u)%~vj5xKOFAtcRJ? zNPgPIhF5S42Rh?RrI{CVGzUZv^8ETW7gXf%?`IVcq&MhVjD>ofK4xFni zH(#t&atlMxOL|Mv1xc@l|H02vm93@Xvw-jHc_c=Jkx~sy?OMv(vDAjGcF<5#d$!s| z-p0xY&~-`1nc*<`Ad+RhdHqH{j2sre=ErwuIC{?HQkb}WBxjOpKQK)bC^h|j-OCfN zc*b-aM*}L7hW1ijP10Zn6-tuq5^`tO(R5}*`|-=w^)$@#q`9uoEGE@fL&te`<_$m0 zQLVjO3(JdVAicoP+h1wy&o#I6Lm0*j8_gumIXA`|MNLLjDSOg7Vu^gXUK<~gk4A>_ zQ3~>ba3GZpLEIivOPw^rfuQc%D!r(T=r&61haS5n6+c7i1q0H-Z+95z>7dk33F4(V zjd(?4b0W8mEQv*$Ta8G1h}5ge8Zg2KvSt+KIaeDdIYk>Ke&F#b4}j8<)KU0ew$_MD zohUM=xZ8S=t}dmMmyzhLT*q06nK^|t9=t9%e_Iza#Sv6wT!XU4tfTl$%STkg7o?U% zC7(g2PbGk>D5lE;5V(-Qo@Fo35S@i!`987V&{-R@+Pl6ef_?+I%16+g-3^;*az6`+ z@fl8>bLJ*Y%+I8Uh_jmAGmXcj(cn2x{Wzus*-} zqFP0Ed4@7t3Xv#R5=zgd^jva*F?~w^(){w}Wx-VqP|XWCx8mHOlASZXnOE=)h=;-v zS~Nud6IH~m#+ptK9+Bh%&_eE+37+9nxDI7MYmEbqhxU=^TWJ0tB>IYx=$ZW`3IjKE zF%7=>|7A<{x(*XA*?ks?P)4L<5vuzft4}dG%{HREmikplH$HeNid|ER?I~WubUku> znsTI?DcTM)|B8ZvW#NWO$};$bA8(Y@?trrDAmBl@HAjy^Ob$vqL>IMq=eXJ(Qagic zW0<(y8B!+!RcrISS_SoPjIfE=MJpagT2dQjac(1OTWA}EK??ss?To06irT|uWg&0j zc{cq)nnu~w?V!|ZJgzLuf^+|lrD98cBOg;c7@JnnrJkmkDBZLn$BI)q0ku|?i@yQXIVj8!_!a% zb6M`Exqw2)ff$kBY%)s)Y$RbUexe0xTnp>1q?LI=?28e$`2{nPpi_NMr|_}Wq|uBt z9j}avmCjI~f~_d2(sE;&$Gn3}w<0Sws}rKtn=Ktzwfj6Dq@-Z@9{S63jct!Sz-l;e z<_{jKhcUPqJR&O2Aj|mz7xEMmMg)`gko5#ie*&>V36wg4&q?Gewm_JS!8cpLC!2x- z0nyH1Z9u&_zz6`?1#SV)t)CLHi+4UC4!3?_IN^P@3v>>P3mXxPmWeZfpO~u(QUPcI zl(qSJX|tv69b%cx+}CCzk)MbyJlJM}5R5U@{~U&0-8`*Uq05Z{6~d4JdN>0HE<^Z2 z9BttXp2Nl$JS*G=#(-s=MSyKwt+8ITptcU9w5;8V+Nr<@sO+Wvyn;XzXlZ5cSI|e4 zT}`4^BhDn&5mFO;0md#B<5Dpaqb&Nle?RCWf}X2%(`sS4K9)0&m^Id_nR8 z*jv4Yh2Fx|c7etj82Y3=-SeZCmPrss>NKo+LG9r2$#~9d_;+=&3QTehRT&vxm7aoA z8W%)P0+sF03Hvw*_OSK1UFDi--(0XD^h0DwoNcOwvf$qLlntkkV1==3yJ=5Zq)S_z zn}n}t8C?Mr`~oKUHH>gUA_2y`wwfkR2Gn_u1ClK&22BOXx~Ld36#!XLF^mcZz=9KD zB!4T+B$g1igI-0%NgQqWz=-525r(j=p`lhoo?l5@+Bie>Q7#1`VTkEYnMiCF)MQ7H zC%GSaO`UoYVh~Do5-)ZrXplg;?aRCXVco$idJ0nt5t*g5XUpC~eKv_iStqO$2ty7R zzg0$7ghz*cw(*kiBapq(8x#v_fKfu>&=q8DOw$F7xCdK6 za@M=*P3#0m=oG;>)GyLOHAN#w4%#frqmqM%Ez05y>41y!xUd#Rfsf^06D}JCcvTj_ zODK$)0yq(caVczmQ>`-20^5uj(kYv-iuoD^6b~s_BuEM)F#|3WpFh2WJ^F|`&pN4i zsIhDsNm>s-Icge*_id~Ix`zN=I^`vSUZiU#s7=HAdM=d4DlduMi|AxF5Nu)%y}jVP z2iDz~nLu=(W+JRdGln663TY@|&M@JAW}f7s!UHfjeEBsr%n&H=Y90mF!dYQ`Sj3eEB7@j$4OI&stBKUt0{0me?WFzu=`i z22`>^mB!Wg)`{1LDfQNg3BhW%Ua<@pFW#B8c40N6a;Y$NtCKKs3438%=mhYYel)EZ++b!fLBOO%#@}}aSY&qwSR@J$&j91Z z3@~e1N&gHclD_iE?_l@NAa=UX42W$Wm|^pZ!rv=%i_7#1la}lyECC`bU?C)6&NopE=!bQLWtb28*e0@10WJhPmvMB z7kjK}KX0WtSdc#3P3^u0w76epa*heZ7c5Vy&6Xd9wGd&n`w|;oV6w_&iOF3gGenw+ znZ;sh@SILUVvZpNS)4>ZQZ(U@EGF;mD}`=fDfaXgqhP4baiw7Tae z?&2q z&0I%?|3U$=4|ZOLBc`wcgGx<=YtC=a76l26+64(<+XaLhJP;cy=-UR7L%CaTb923T z=bnT@h^8gy}YfU918y3=fFBhKKDrnqqV_1C@C%h#`7Tai8guJ7iFG{;Xnt2Cl62TZoOrqlDtC+u4^q!8a}y+ML31?KOenTrOzSD5>!HqBpkEJN8|)U zK-7l-hVX;m1;+`~0g!JZPN^u^0HPH*Q`!Uo4;$z><{|OcFh}@o1Q)Vp0a?Nf_OSmD zlUSA$$D`T`*D~x zUdY;`U&7@T?$KiG`EngNwJ_4NjsQb0+zdDz>=LVBBEQbYz8HGWnU6q|;71*8&pK(i zmSliHG%FKG-rxSZ;PSuZ{HSL5k?!j9OWxeh z*D=5{ZwvQbgxml{t?q8*SvnoI9z@|!FqV4gqPzD zj)Pl4AFi>Xof)3pcwsQxl{_v`3ARE)Jv4OA(Ob}c$P-ULinf6|KSR71IOGARKt~7} z=|-O5_@I$t;k@DK8xh*@gyznP5QQ8l(M4zp4^yz1AjJD|*y7PtBeIP7HlGCiOeE2Z zet8XZ=PPlA`#7xE71Df{x$iOgITKzcnH?f6-sNUVwu$Zs$jPzr%8ixz*S*ft-S^q$ zJtlihxH&bk>MnC{GkJ%}kC^-n$-%Q9{RXv1%jokcAEUuU2*<}tV+`=DA#2)f-%4oX zXMufAA?dIg@4apKTvIvNYPb)dYZW4^LGU91nnXLlmbDQ#P6m z<7O-W1bXUGWxrKY#a>eDd#Q6hz55w&AI0|qxUeeuqFuLS@ejairRPnOwG9n!1sT;^ zv5>5Te@!rtfj(#(J^ui};Lx-!nF~Hvn2UG!SICOTG#%Rh(DdVZ*M2W5@qj#f@Q|Sa z^sl8)#*7%v&FSc*HFJckr|0v$AgOwuiF(9_1ny!;v>bCj^8#}(F_BH5?Bird$IYDk zE|ado{gTCxkaXWsatHNK4kH-)JXDVVCV7>wAjic+xWE{*%fsbLd9ci%>GFy4So!ht M)8#|ulW2YJzY+KN)Bpeg diff --git a/BOFdat/update.pyc b/BOFdat/update.pyc deleted file mode 100644 index 4c0c11cf9aa725afc935ec14f55e5d30a0de4389..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 1979 zcmcIlQE${n5T5nrE{Wkn38g41s{8=b@j&jahzL+c1Fb4Gl^h}@1TsE*FSnPo_wepT zM9Mv-0{X}s&-|wTlm3AAoADjoNfl4Q@{ZR#>)Dxaz8N?EX@?(gwV!1)yA+;3VYn+0 zIngsnMSo(VC=Y1A(_rOYi11*Xr(TEmk?7fUlbvY)Z`ihDm+OG~iQk++R4ZArqpvxE1xGTA?>Y(*~UebgJk~(R77Q@d`5lO%;?g)=+GSN+Cx*0CqBwe=8Y}W>IBZR zg`II)rG=~~wx2A1yc4Ah`y<GXu|D42Gikfu<>sVozxbe6T5U=0QvIGL}zBr@j0iiwA)sMP2pm>8W zpcVW$ZPM$P9Pv$cfiRrq~Hah&70PZ=zb4D%f zaGoplNaS%{RNPnmCjtUc!(B>tRGvZ0CRK$pT0F>KoSPR8rK39Ea{L-plJ9dY&F^8e zZ_1_0NlZCU{Y|LdCIkgrs--qiotuqKJlkrorXCX@-eAE$hL|yqnavCAWLV=*5uBs* zd~Dri=Kh9QaSS0{SYKIhuCH!xT!g3WffRm{