From ed3a24dbebf0091a2171c169a47962484b5e7d04 Mon Sep 17 00:00:00 2001
From: Jonas Fuchs <78491186+jonas-fuchs@users.noreply.github.com>
Date: Fri, 3 Nov 2023 15:57:46 +0100
Subject: [PATCH] fixed bed strand if none provided (#9)

---
 bamdash/scripts/data.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/bamdash/scripts/data.py b/bamdash/scripts/data.py
index 6d6d917..054f059 100644
--- a/bamdash/scripts/data.py
+++ b/bamdash/scripts/data.py
@@ -269,6 +269,8 @@ def bed_to_dict(bed_file, coverage_df, ref, min_cov):
         bed_dict["bed annotations"][f"{start} {stop}"] = {}
         bed_dict["bed annotations"][f"{start} {stop}"]["start"] = start
         bed_dict["bed annotations"][f"{start} {stop}"]["stop"] = stop
+        # always add strand dummy information in case its not in bed file
+        bed_dict["bed annotations"][f"{start} {stop}"]["strand"] = "NA"
         # check for additional info
         if len(line) > 3:
             for element, classifier in zip(line[3:], possible_classifiers):