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Copy pathKleborate_prerun_output.txt
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Kleborate_prerun_output.txt
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strain species species_match contig_count N50 largest_contig total_size ambiguous_bases QC_warnings ST virulence_score resistance_score num_resistance_classes num_resistance_genes Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus K_type K_locus_problems K_locus_confidence K_locus_identity K_locus_missing_genes O_locus O_type O_locus_problems O_locus_confidence O_locus_identity O_locus_missing_genes AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits Chr_ST gapA infB mdh pgi phoE rpoB tonB ybtS ybtX ybtQ ybtP ybtA irp2 irp1 ybtU ybtT ybtE fyuA clbA clbB clbC clbD clbE clbF clbG clbH clbI clbL clbM clbN clbO clbP clbQ iucA iucB iucC iucD iutA iroB iroC iroD iroN rmpA rmpD rmpC spurious_virulence_hits
ERR1204817 Klebsiella pneumoniae strong 69 242226 520418 5555819 yes (392) ambiguous_bases ST11 1 1 10 14 ybt 10; ICEKp4 (truncated) 19-1LV - 0 - 0 - 0 - 0 - wzi50 KL15 K15 none Very high 99.78% O4 O4 - High 99.64% O4_06_glycosyltransferase aadA16*;aph3-Ia.v1^ - - qnrB4 - mphA catA1^;catB3.v2 arr-3 sul1;sul1 tet(A).v1* - dfrA27 DHA-1;OXA-1 - CTX-M-15 - - SHV-11.v1 35Q OmpK36-21% - GyrA-83I;ParC-80I - aac(6')-Ib-cr.v1?-0% ST11 3 3 1 1 1 1 4 16 12 4 3 3 424*-85% 50 3 10 23 2 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
ERR1415571 Klebsiella pneumoniae strong 99 188246 574823 5614954 yes (696) ambiguous_bases ST14 1 2 10 19 ybt 14; ICEKp5 140 - 0 - 0 - 0 - 0 - wzi2 KL2 K2 none Very high 99.73% O1/O2v1 O1 ?- Good 99.98% O1/O2v1_06_wbbO aac(3)-IId^;aac(6')-Ib-cr.v2*;sat-2;strA.v1*;strB.v1* - - - - ereA2* CatB4.v1?;catA1^;cmlA5 arr-2 sul1*;sul2 - - dfrA1.v1 OXA-1;OXA-9.v1;TEM-1D.v1^ - CTX-M-15;SHV-12 - OXA-232 - 238S;240K;35Q OmpK35-69%;OmpK36GD - GyrA-83Y;GyrA-87G;ParC-80I aadA?-0% - ST14 1 6 1 1 1 1 1 4 4 31 4 1 67 171 2 4 4 36 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
ERR4920378 Klebsiella pneumoniae strong 43 367168 771932 5200443 no - ST105 1 0 0 0 ybt 0; ICEKp? 452-3LV - 0 - 0 - 0 - 0 - wzi383 unknown (KL102) unknown (KL102) ?- None 98.83% KL102_10,KL102_11,KL102_12,KL102_13 O1/O2v2 O2afg none Very high 98.42% - - - - - - - - - - - - - - - - - SHV-1^ - - - - - - ST105 2 3 2 1 1 4 18 138 63 123 68 72 299 333* 9* 8 104 14* - - - - - - - - - - - - - - - - - - - - - - - - - - - -
ERR4920436 Klebsiella pneumoniae strong 109 281841 406372 5501897 no - ST218 4 1 7 14 ybt 9; ICEKp3 202-3LV - 0 iuc 1 (incomplete) 1-1LV iro 1 1 rmp 1; KpVP-1 (truncated) 26-1LV rmpA2_8-60% wzi77 KL57 K57 none Very high 98.78% O1/O2v2 O2afg none Very high 98.67% aac(3)-IIa.v1^;aac(6')-Ib-cr.v2;aadA*;strA.v1;strB.v1 - - - - - catII.2*;cmlA5 arr-2 - tet(A).v1 - dfrA14.v2* OXA-1;OXA-10;TEM-1D.v1^ - CTX-M-15 - - SHV-1^ - - - - CatB4.v1?-81% - ST218 2 3 1 1 9 4 12 5 19 26* 5 1 378 53 9 5 5 21* - - - - - - - - - - - - - - - 1 1 - 1 1 1 1 1 1 26*-0% 2 2 iucC_1*-61%
ERR4920450 Klebsiella pneumoniae strong 110 192649 419803 5440718 no - ST218 4 1 8 13 ybt 9; ICEKp3 202-3LV - 0 iuc 1 (truncated) 1-1LV iro 1 1 - 0 rmpA2_8*-0% wzi77 unknown (KL57) unknown (K57) ?- Low 98.70% KL57_07_wcaJ,KL57_08_wzx O1/O2v2 O2afg none Very high 98.67% aac(6')-Ib-cr.v2;aadA*;strA.v1^;strB.v1 - - - - - cmlA5 arr-2 sul2 tet(A).v1 - dfrA14.v2* OXA-1;OXA-10;TEM-1D.v1^ - CTX-M-15 - - SHV-1^ - - - - CatB4.v1?-81% - ST218 2 3 1 1 9 4 12 5 19 26* 5 1 378 53 9 5 5 21* - - - - - - - - - - - - - - - 1*-0% 1 1 1 1 1 1 1 1 - - 2 rmpD_4*-0%
ERR4920551 Klebsiella pneumoniae strong 306 48613 146404 5869852 no - ST15 4 2 6 10 ybt 16; ICEKp12 277 - 0 iuc 1 (truncated) 1-1LV - 0 - 0 - wzi93 unknown (KL112) unknown (KL112) ?- None 98.42% KL112_08,KL112_09_wzy,KL112_10_wcaO,KL112_11_wcaN,KL112_12_wbaZ,KL112_13_wcuV,KL112_14_wzx O1/O2v1 O1 none Very high 98.52% aac(6')-Ib3^;rmtC;strA.v1*;strB.v1 - - - - - - - sul1;sul2 - - - CMY-6;TEM-1D.v1^ - CTX-M-15 - NDM-1 SHV-28.v1^ - OmpK35-46% - GyrA-83F;GyrA-87A;ParC-80I tet(A).v1*?-0% - ST15 1 1 1 1 1 1 1 6 15 5 4 11 33 23 2 11 4 2 - - - - - - - - - - - - - - - 1*-0% 1 1 1 1 - - - - - - - -